| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,459,545 – 17,459,658 |
| Length | 113 |
| Max. P | 0.861196 |
| Location | 17,459,545 – 17,459,658 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 93.67 |
| Shannon entropy | 0.10910 |
| G+C content | 0.52031 |
| Mean single sequence MFE | -27.80 |
| Consensus MFE | -25.54 |
| Energy contribution | -25.22 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861196 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17459545 113 + 27905053 CCCCUCCCGCUCAACCAACCGCUUCACCAUCUUCUUUAUCUUUAUCAGUUGUGUGCCAAGUGUUGCAUUGCGUUGCAGUGACGACA--UUGUUGUAGUUGCAGCAGCACAGCAGC ...............................................(((((((((..(((((((((((((...)))))).)))))--))(((((....))))).))))).)))) ( -27.30, z-score = -0.68, R) >droSim1.chr3R 23506971 113 - 27517382 CCCCUCCCGCUCACCCAUCCGCUUCCCCAUCUUCUUUAUCUUUAUCAGUUGUGUGCCAAGUGUUGCAUUGCGUUGCAGUGACGACA--UUGUUGUAGUUGCAGCAGCGCUGCAGC ........((.(((....................................))).)).....((((((..(((((((.(..((.(((--....))).))..).))))))))))))) ( -27.52, z-score = -1.20, R) >droSec1.super_6 325939 113 - 4358794 CCCCUCCCGCUCUCCCAUCCGCUUCCCCAUCUUCUUUAUCUUUAUCAGUUGUGUGCCAAGUGUUGCAUUGCGUUGCAGUGACGACA--UUGUUGUAGUUGCAGCAGCGCUGCAGC ...............................................(((((((((..(((((((((((((...)))))).)))))--))(((((....))))).)))).))))) ( -26.50, z-score = -1.09, R) >droYak2.chr3R 6297014 115 + 28832112 UCCUUCCCCCUCUCCCAUCCUCUUCCCCAUCUUCCUUAUCUUUAUCAGUUGUGUGCCAAGUGUUGCAUUGCGUUGCAGUGACGACACAUUGUUGUAGUUGCAGCAGCGCUGCAGC ...............................................(((((((((...((((((((((((...)))))).))))))..((((((....)))))))))).))))) ( -29.00, z-score = -2.81, R) >droEre2.scaffold_4770 13540557 113 - 17746568 CCCUCCCCCCUCUCCCAUCCUCUUCCCCAUCUUAUUUAUCUUUAUCAGUUGUGUGCCAAGUGUUGCAUUGCGUUGCAGUGACGACA--UUGUUGCAGUUGCAGCAGCGCUGCAGC ...............................................(((((((((..(((((((((((((...)))))).)))))--))(((((....))))).)))).))))) ( -28.70, z-score = -2.71, R) >consensus CCCCUCCCGCUCUCCCAUCCGCUUCCCCAUCUUCUUUAUCUUUAUCAGUUGUGUGCCAAGUGUUGCAUUGCGUUGCAGUGACGACA__UUGUUGUAGUUGCAGCAGCGCUGCAGC ...............................................(((((((((....(((((((((((...)))))).)))))...((((((....)))))))))).))))) (-25.54 = -25.22 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:58 2011