| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,432,860 – 17,432,944 |
| Length | 84 |
| Max. P | 0.982464 |
| Location | 17,432,860 – 17,432,944 |
|---|---|
| Length | 84 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 96.67 |
| Shannon entropy | 0.05750 |
| G+C content | 0.44862 |
| Mean single sequence MFE | -21.11 |
| Consensus MFE | -21.00 |
| Energy contribution | -21.04 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.982464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17432860 84 + 27905053 CUGCGGACGUAGUUCCAGUUGUAGUCCGUAGUUUCCAGUCGUAGUGGUUGUAAUUUGUAAUCGAGUGUUUACACUCUGUCUGCU ((((((((...............)))))))).........((((.(((((.......)))))(((((....)))))...)))). ( -22.56, z-score = -2.58, R) >droEre2.scaffold_4770 13516861 84 - 17746568 CUGCGGACGUAGUUCCAGUUGUAGUCCGUAGUUUCCAGUCGUAGUGGUUGUAAUUUGUAAUCGAGUGUUUACACUCCCUCUGCU ((((((((...............)))))))).........((((.((.........(....)(((((....))))))).)))). ( -22.56, z-score = -2.81, R) >droYak2.chr3R 6273254 83 + 28832112 CUGCAGACGUAGUUCUAGUUGUAGUU-GUAGUUUCCAGUCGUAGUGGUUGUAAUUUGUAAUCGAGUGUUUACACUCCCUCUGCU (((.((((......(((....)))..-...)))).)))..((((.((.........(....)(((((....))))))).)))). ( -15.30, z-score = -0.32, R) >droSec1.super_6 302019 84 - 4358794 CUGCGGACGUAGUUCCAGUUGUAGUCCGUAGUUUCCAGUCGUAGUGGUUGUAAUUUGUAAUCGAGUGUUUACACUCUGUCUGCU ((((((((...............)))))))).........((((.(((((.......)))))(((((....)))))...)))). ( -22.56, z-score = -2.58, R) >droSim1.chr3R 23481867 84 - 27517382 CUGCGGACGUAGUUCCAGUUGUAGUCCGUAGUUUCCAGUCGUAGUGGUUGUAAUUUGUAAUCGAGUGUUUACACUCUGUCUGCU ((((((((...............)))))))).........((((.(((((.......)))))(((((....)))))...)))). ( -22.56, z-score = -2.58, R) >consensus CUGCGGACGUAGUUCCAGUUGUAGUCCGUAGUUUCCAGUCGUAGUGGUUGUAAUUUGUAAUCGAGUGUUUACACUCUGUCUGCU ((((((((...............)))))))).........((((.(((((.......)))))(((((....)))))...)))). (-21.00 = -21.04 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:53 2011