| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,424,774 – 17,424,872 |
| Length | 98 |
| Max. P | 0.987262 |
| Location | 17,424,774 – 17,424,872 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 66.28 |
| Shannon entropy | 0.54998 |
| G+C content | 0.43268 |
| Mean single sequence MFE | -18.21 |
| Consensus MFE | -8.77 |
| Energy contribution | -10.27 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.987262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17424774 98 - 27905053 AUCUGUCGUUUAAUUUAUUUUCAUUUUUGUAUAAGUAAUCGACGGCGGUAACCCCUUCAAUGACAAUUU-GUUGCCGCCUUUCGCUGU-CCCAACUCCCG ....((((.(((.(((((...((....)).)))))))).))))(((((((((.................-))))))))).........-........... ( -21.23, z-score = -3.24, R) >droYak2.chr3R 6262824 98 - 28832112 AUCUGUCAUUUAAUUUAUUUUCAUUUUUGUAUAAGUAAAC--CGGCGGUAACCCCUUCAAUGGCAAUUUGGUUGCCGCCAUUCGCUGUCCCCAACUCCCU .............(((((((.((....))...))))))).--.((((((((((((......))......))))))))))..................... ( -21.70, z-score = -2.60, R) >droSec1.super_6 293829 98 + 4358794 AUCUGUCGUUUAAUUUAUUUUCAUUUUUGUUUAAGUAAUCGGCGGCGGUAACCCCUUCAAUGACAAUUU-GUUGCCGCCUUUCGCUGU-CCCAACUCCCU ....((((.(((.((((....((....))..))))))).))))(((((((((.................-))))))))).........-........... ( -19.23, z-score = -2.01, R) >droGri2.scaffold_14906 11695143 82 - 14172833 --------------GCAGUCGUAAAUUCAUUUUCAUGAACAGUUGCAGCAACUGCUGACAUUUUAACC--AGCCCCGCC-UUCACUCUCCCCUUUACCG- --------------((.((.((((.(((((....)))))...)))).))....((((..........)--)))...)).-...................- ( -10.70, z-score = -1.22, R) >consensus AUCUGUCGUUUAAUUUAUUUUCAUUUUUGUAUAAGUAAACGGCGGCGGUAACCCCUUCAAUGACAAUUU_GUUGCCGCCUUUCGCUGU_CCCAACUCCCU ...........................................(((((((((..................)))))))))..................... ( -8.77 = -10.27 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:51 2011