| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,390,861 – 17,390,918 |
| Length | 57 |
| Max. P | 0.826753 |
| Location | 17,390,861 – 17,390,918 |
|---|---|
| Length | 57 |
| Sequences | 3 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 84.15 |
| Shannon entropy | 0.20944 |
| G+C content | 0.38947 |
| Mean single sequence MFE | -8.72 |
| Consensus MFE | -7.64 |
| Energy contribution | -7.53 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826753 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17390861 57 + 27905053 CACCUGAGCUCCUUCCUAUAUAAAUAUGUAUGUGUACAUACAAUUUUAUGGCUCCGU .....(((((.........(((((..((((((....))))))..))))))))))... ( -11.60, z-score = -2.35, R) >droSec1.super_6 259846 50 - 4358794 CACCUGAGCUCCAUCCUAUAUA------UGUGUGUACAAAUAAUUUUAUGGCUCCG- .....(((((........(((.------(((....))).))).......)))))..- ( -5.56, z-score = -0.09, R) >droSim1.chr3R 23439154 50 - 27517382 CACCUGAGCUCCUUCCUACAUA------UGUAUGUACAUAUAAUUUUAUGGCUCCG- .....((((.......(((((.------...)))))((((......))))))))..- ( -9.00, z-score = -2.19, R) >consensus CACCUGAGCUCCUUCCUAUAUA______UGUGUGUACAUAUAAUUUUAUGGCUCCG_ .....((((.......((((((........))))))((((......))))))))... ( -7.64 = -7.53 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:42 2011