| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,389,679 – 17,389,779 |
| Length | 100 |
| Max. P | 0.626869 |
| Location | 17,389,679 – 17,389,779 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 83.96 |
| Shannon entropy | 0.31876 |
| G+C content | 0.38607 |
| Mean single sequence MFE | -24.10 |
| Consensus MFE | -18.88 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626869 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 17389679 100 + 27905053 -----------GUGUGGCACAAUACAUGUGCAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGUGCUUUCCCCCGCCC------- -----------(((.(((((((.((((...(((((((((.........((((....))))......(((.....)))))))))))).)))).)).)))))......)))..------- ( -24.40, z-score = -1.72, R) >droGri2.scaffold_14830 5440622 100 + 6267026 -----------GUGCUGCACAAUACAUGCGCAUAAAUUAUUUAGCAAUGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGUGCUCUGCUCCGUUU------- -----------..((.((((((.((((...((((((.(((((((((((((((....))))....))))).)))...))).)))))).)))).)).))))...)).......------- ( -23.90, z-score = -0.54, R) >droVir3.scaffold_13047 4693883 100 - 19223366 -----------GUGCUGCACAAUAUAUGCGCAUAAAAUAUUUAGCAAUGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGUGUUCAGCUCCCUUU------- -----------..((((.(((..((((...((((((((((((((((((((((....))))....))))).)))...)))))))))).)))).....))).)))).......------- ( -25.20, z-score = -1.66, R) >droMoj3.scaffold_6540 16176651 100 - 34148556 -----------GUGCUGCACAAUACAUGCGCAUCAAAUAUUUAGCAAUGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUCAUGAAUGUUUUCGUGUUCAGCUCUUUUU------- -----------(.((((.(((..((((...(((.((((((((((((((((((....))))....))))).)))...)))))).))).)))).....))).)))).).....------- ( -23.50, z-score = -0.64, R) >droWil1.scaffold_181130 4191625 111 - 16660200 UGUGUGUUUUGGUGUUGUGCAAUACAUGUGCAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUU---GUUUUCUGUUCUCUUUCUC---- .(((((....(((((((((((.......))).(((.....))))))))))))))))(((..((((..(((.....((((...)))).....)---))..))))..)))......---- ( -26.30, z-score = -1.08, R) >droPer1.super_7 3786488 104 - 4445127 -----------GUGCUGUACAAUACACAUGCAUGAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGAGCAUUUCGCCCCUCGCCC--- -----------((((((((...)))((((.(((((((((.........((((....))))......(((.....)))))))))))).)))).....)))))..............--- ( -20.60, z-score = -0.54, R) >dp4.chr2 3691521 107 + 30794189 -----------GUGCUGUACAAUACACAUGCAUGAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGAGCAUUUCGCCCCCCUCUGUAC -----------.....(((((....((((.(((((((((.........((((....))))......(((.....)))))))))))).))))......((.....)).......))))) ( -20.90, z-score = -0.65, R) >droAna3.scaffold_13340 17725437 107 + 23697760 ----UGUGUGAGUGUGGGACAAUACAUGUGAAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUACAUAUUUUAUGAAUGUUUUCGUGUUUUUCCUCUCGC------- ----...(((((...((((.(((((......((((((((((((((((.((((....)))).....)))).)))...)))))))))(((....)))))))).)))).)))))------- ( -25.80, z-score = -1.38, R) >droEre2.scaffold_4770 13471106 99 - 17746568 -----------GUGUGGCACAAUACAUGUGCAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGUGC-UUUCCCCGCUC------- -----------(((.(((((((.((((...(((((((((.........((((....))))......(((.....)))))))))))).)))).)).))))-).....)))..------- ( -25.50, z-score = -1.81, R) >droYak2.chr3R 6226810 101 + 28832112 -----------GUGUGGCACAAUACAUGUGCAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGUGU-UUUCCCCGCUCUC----- -----------((((((((((.....)))))...........(((...))))))))((((...((..((((...((((.........))))....))))-..))...))))..----- ( -24.30, z-score = -1.59, R) >droSec1.super_6 258796 100 - 4358794 -----------GUGUGGCACAAUACAUGUGCAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUUAUGCAUAUUUUAUGAAUGUUUUCGUGCUUUCCCCCGCCC------- -----------(((.(((((((.((((...(((((((((.........((((....))))......(((.....)))))))))))).)))).)).)))))......)))..------- ( -24.40, z-score = -1.76, R) >droSim1.chr3R 23438094 100 - 27517382 -----------GUGUGGCACAAUACAUGUGCAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGUGCUUUCCCCCGCCC------- -----------(((.(((((((.((((...(((((((((.........((((....))))......(((.....)))))))))))).)))).)).)))))......)))..------- ( -24.40, z-score = -1.72, R) >consensus ___________GUGUGGCACAAUACAUGUGCAUAAAAUAUUUAGCAACGCUCACACGAGCUUAGAUUGCAUAAUGCAUAUUUUAUGAAUGUUUUCGUGCUUUUCCCCGCUC_______ ................((((...((((...(((((((((((((((((.((((....)))).....)))).)))...)))))))))).))))....))))................... (-18.88 = -19.10 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:41 2011