| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,386,790 – 17,386,883 |
| Length | 93 |
| Max. P | 0.684224 |
| Location | 17,386,790 – 17,386,883 |
|---|---|
| Length | 93 |
| Sequences | 12 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.97 |
| Shannon entropy | 0.32347 |
| G+C content | 0.37983 |
| Mean single sequence MFE | -17.99 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.82 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.684224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17386790 93 - 27905053 ---------------CCGUUUGGGCCUUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUCCACCAGCC----------- ---------------....((((((....)).....(.(((((..((....(((((.(((((.......))))))))))....))..)))))...)......))))..----------- ( -16.80, z-score = -0.68, R) >droSim1.chr3R 23435212 93 + 27517382 ---------------CCGUUAGCGCCUUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUCCACCAGCC----------- ---------------..((((((((....)))))..(.(((((..((....(((((.(((((.......))))))))))....))..)))))...)........))).----------- ( -17.10, z-score = -1.56, R) >droSec1.super_6 255926 93 + 4358794 ---------------CCGUUAGCGCCUUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUCCAUCAGCC----------- ---------------..((((((((....)))))..(.(((((..((....(((((.(((((.......))))))))))....))..)))))...)........))).----------- ( -17.10, z-score = -1.61, R) >droYak2.chr3R 6223848 97 - 28832112 ---------------CCGUUUCCGCCUUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUCCACCAACCAACC------- ---------------.......(((....)))....(.(((((..((....(((((.(((((.......))))))))))....))..)))))...)................------- ( -15.00, z-score = -1.82, R) >droEre2.scaffold_4770 13468117 93 + 17746568 ---------------CCGCUUCCGCCUUCGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUCCACCAGCC----------- ---------------.((((..(((....)))...))))((((..((....(((((.(((((.......))))))))))....))..)))).................----------- ( -17.00, z-score = -2.24, R) >droAna3.scaffold_13340 17722898 93 - 23697760 ---------------UCAUUUCCGCUUUUGCGUUUAGAGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUUCGCCAACU----------- ---------------..............(((...((((((((..((....(((((.(((((.......))))))))))....))..)))))))).....))).....----------- ( -19.00, z-score = -2.71, R) >dp4.chr2 3688356 98 - 30794189 ---------------CCGUUUCCGCUUUUGCGUUUAGUGCAAAUUCAAUAUCCUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUUCACCAGCAUCGCC------ ---------------........((...((((((...((((((((.(((..........)))))))))))...))).............((....))........)))..)).------ ( -11.70, z-score = 0.11, R) >droPer1.super_7 3783347 98 + 4445127 ---------------CCGUUUCCGCUUUUGCGUUUAGUGCAAAUUCAAUAUCCUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUUCACCAGCAUAGCC------ ---------------........(((..((((((...((((((((.(((..........)))))))))))...))).............((....))........))).))).------ ( -13.40, z-score = -0.52, R) >droWil1.scaffold_181130 4182713 104 + 16660200 ---------------CCGUUUCCGCUUUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUUCACCAACUUUGCUCGCGUA ---------------.......(((....(((...((((((((..((....(((((.(((((.......))))))))))....))..))))).............))).)))..))).. ( -17.81, z-score = -1.02, R) >droVir3.scaffold_13047 4691277 104 + 19223366 -CUGGCCAUGUCCGGCAU-UUCCGC-UUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACG-UUCUGUUUUUGUUUUCAUUUCACCAGGU----------- -((((..((((..(((..-....))-)..))))...(.(((((..((....(((((.(((((.......))))))))))-...))..)))))...)......))))..----------- ( -22.10, z-score = -1.11, R) >droMoj3.scaffold_6540 16173886 106 + 34148556 -CUGGCCAGGUUCGGCCCAUUUUGC-UUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUUCCCCAGCG----------- -..((((......))))......((-(...........(((((..((....(((((.(((((.......))))))))))....))..)))))............))).----------- ( -22.70, z-score = -1.22, R) >droGri2.scaffold_14830 5437430 107 - 6267026 CUGGGCAGUUGGAUAGCACUUCCGC-UUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUUCACCAGUU----------- ((((...(((((((.(((((..(((-...)))...)))))..)))))))..(((((.(((((.......)))))))))).......................))))..----------- ( -26.20, z-score = -2.21, R) >consensus _______________CCGUUUCCGCCUUUGCGUUUAGUGCAAAUUCAAUAUCGUGCAUAAUUAAUUUGCAAUUAGCACGUUUCUGUUUUUGUUUUCAUUUCACCAGCC___________ ......................(((....)))......(((((..((....(((((.(((((.......))))))))))....))..)))))........................... (-13.64 = -13.82 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:40 2011