| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,384,501 – 17,384,592 |
| Length | 91 |
| Max. P | 0.585663 |
| Location | 17,384,501 – 17,384,592 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 98.35 |
| Shannon entropy | 0.03279 |
| G+C content | 0.31208 |
| Mean single sequence MFE | -14.02 |
| Consensus MFE | -13.94 |
| Energy contribution | -13.94 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.94 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.585663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17384501 91 + 27905053 ACUCUUU-ACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA .......-(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.95, R) >droSim1.chr3R 23432354 91 - 27517382 ACUCUUU-ACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA .......-(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.95, R) >droSec1.super_6 253770 91 - 4358794 ACUCUUU-ACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA .......-(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.95, R) >droYak2.chr3R 6220121 91 + 28832112 ACUCUUU-ACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA .......-(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.95, R) >droEre2.scaffold_4770 13465555 91 - 17746568 ACUCUUU-ACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA .......-(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.95, R) >droAna3.scaffold_13340 17721215 92 + 23697760 ACUCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.96, R) >dp4.chr2 3685246 92 + 30794189 ACUCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.96, R) >droPer1.super_7 3780240 92 - 4445127 ACUCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.96, R) >droWil1.scaffold_181130 4178997 92 - 16660200 ACUCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.96, R) >droMoj3.scaffold_6540 16171887 92 - 34148556 ACCCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCCUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.97, R) >droVir3.scaffold_13047 4689465 92 - 19223366 ACCCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAACCCGCAAAUUAUUUUAAUUGCCUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -13.20, z-score = -0.73, R) >droGri2.scaffold_14830 5435423 92 + 6267026 ACCCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCCUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... ( -14.10, z-score = -0.97, R) >consensus ACUCUUUUACAUGCAAAAUUAAAUGAUGCGCAUACGCACGGUAAAACCGCAAAUUAUUUUAAUUGCUUGUCUCGUCAUUAUUCAUUAUUUAA ........(((.((((....((((((((((....))).(((.....)))...)))))))...)))).)))...................... (-13.94 = -13.94 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:38 2011