| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,381,982 – 17,382,080 |
| Length | 98 |
| Max. P | 0.613250 |
| Location | 17,381,982 – 17,382,080 |
|---|---|
| Length | 98 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 84.43 |
| Shannon entropy | 0.31277 |
| G+C content | 0.64252 |
| Mean single sequence MFE | -47.60 |
| Consensus MFE | -39.21 |
| Energy contribution | -38.58 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.613250 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17381982 98 + 27905053 -----GCUG-GGCGGCGGCCAGGAACUGCGGAUUCUGCAGCAAGUGGGGAUGCUGCUGCAGCAGGGCCGCAUGAGGAUGCUGCAGUGGCUCCGGCCUUGCCAAG -----....-(((((.((((.....((((((...)))))).......(((.((..((((((((...((......)).))))))))..))))))))))))))... ( -52.00, z-score = -1.84, R) >droYak2.chr3R 6217644 98 + 28832112 -----GCUG-GGCGGCGGCCAGGAACUGCGGGUUCUGCAGCAAGUGGGGAUGCUGCUGCAGCAGGGCCGCAUGUGGAUGCUGCAGUGGCUCCGGCCUUGCCAAG -----....-(((((.((((.....((((((...)))))).......(((.((..((((((((...(((....))).))))))))..))))))))))))))... ( -52.50, z-score = -1.48, R) >droEre2.scaffold_4770 13463077 98 - 17746568 -----GCUG-GGCGGCGGCCAGGAACUGCGGGUUCUGCAGCAAGUGGGGAUGCUGCUGCAGCAAGGCCGCAUGUGGAUGCUGCAGUGGCUCCGGCCUUGCCAAG -----....-(((((.((((.....((((((...)))))).......(((.((..((((((((...(((....))).))))))))..))))))))))))))... ( -51.40, z-score = -1.39, R) >droPer1.super_7 3777133 104 - 4445127 GCUGGGCCGCGGCCGCGGCCAGGAACUGUGGAUUCUGCAGCAGAUGCGGAUGCUGUUGCAGCAGGGCCGCGUGUGGAUGCUGCAGUGGCUCAGGGCGCGCCAAC .(((((((((..((((((.......))))))....(((((((.((((((.(((((...)))))...)))))).....))))))))))))))))((....))... ( -52.20, z-score = -0.63, R) >dp4.chr2 3682127 104 + 30794189 GCUGGGCCGCGGCCGCGGCCAGGAACUGUGGAUUCUGCAGCAGAUGCGGAUGCUGUUGCAGCAGGGCCGCGUGUGGAUGCUGCAGUGGCUCGGGGCGCGCCAAC .(((((((((..((((((.......))))))....(((((((.((((((.(((((...)))))...)))))).....))))))))))))))))((....))... ( -51.50, z-score = -0.41, R) >droSec1.super_6 251293 98 - 4358794 -----GCUG-GGCGGCGGCCAGGAACUGCGGGUUCUGCAGCAAGUGGGGAUGCUGCUGCAGCAGGGCCGCAUGUGGAUGCUGCAGUGGCUCCGGCCUUGCCAAG -----....-(((((.((((.....((((((...)))))).......(((.((..((((((((...(((....))).))))))))..))))))))))))))... ( -52.50, z-score = -1.48, R) >droSim1.chr3R 23429884 98 - 27517382 -----GCUG-GGCGGCGGCCAGGAACUGCGGGUUCUGCAGCAAGUGGGGAUGCUGCUGCAGCAGGGCCGCAUGUGGAUGCUGCAGUGGCUCCGGCCUUGCCAAG -----....-(((((.((((.....((((((...)))))).......(((.((..((((((((...(((....))).))))))))..))))))))))))))... ( -52.50, z-score = -1.48, R) >droWil1.scaffold_181130 4176010 98 - 16660200 -----GCUG-GGCAGCUGCUAGGAAUUGUGGAUUUUGCAAUAGAUGCGGAUGUUGUUGCAACAAUGCUGCAUGUGGAUGCUGCAAUGGUUCCGGUCUUGCCAAA -----....-(((((..(((.(((((..(.(.....(((.((.((((((.((((((....)))))))))))).))..)))..).)..)))))))).)))))... ( -31.30, z-score = -0.14, R) >droGri2.scaffold_14830 5432250 98 + 6267026 ------GUGCGGCAGCGGCUAGAAAUUGUGGAUUCUGCAGCAAGUGCGGAUGCUGUUGCAGUAGCGCUGCAUGUGGAUGCUGCAGUGGCUCCGGUCGUGCCAAA ------....((((.((((..((.((((..(..((..(((((.((((...(((....)))...))))))).))..))..)..))))...))..))))))))... ( -43.20, z-score = -1.36, R) >droMoj3.scaffold_6540 16168505 98 - 34148556 ------GGGCGGCAGCGGCUAGAAACUGUGGAUUCUGCAGCAGGUGCGGAUGCUGUUGCAGCAGUGCGGCAUGUGGAUGCUGCAAUGGCUCCGGCCGUGCCAAG ------....((((.((((......(((..(...)..)))......((((.((((((((((((...(.(....).).))))))))))))))))))))))))... ( -45.00, z-score = -0.97, R) >droVir3.scaffold_13047 4686387 98 - 19223366 ------GAGCGGCAGCGGCUAGAAACUGUGGAUUCUGCAACAAAUGCGGAUGCUGCUGCAGCAAUGCCGCAUGGGGAUGCUGCAAAGGCUCCGGUCUUGCCAAA ------....(((((.(((..((..(((..(..((((((.....))))))..)..)(((((((.(.((....)).).))))))).))..))..))))))))... ( -39.50, z-score = -1.15, R) >consensus _____GCUG_GGCGGCGGCCAGGAACUGUGGAUUCUGCAGCAAGUGCGGAUGCUGCUGCAGCAGGGCCGCAUGUGGAUGCUGCAGUGGCUCCGGCCUUGCCAAG ..........(((...((((.....((((((...)))))).......(((.((..((((((((...(((....))).))))))))..)))))))))..)))... (-39.21 = -38.58 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:37 2011