| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,173,578 – 8,173,686 |
| Length | 108 |
| Max. P | 0.706649 |
| Location | 8,173,578 – 8,173,686 |
|---|---|
| Length | 108 |
| Sequences | 10 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 69.19 |
| Shannon entropy | 0.66971 |
| G+C content | 0.51650 |
| Mean single sequence MFE | -34.25 |
| Consensus MFE | -13.23 |
| Energy contribution | -12.86 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.706649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8173578 108 + 23011544 ----AUUAAUACUAUAUAU--UUUG---UAGGCCAUUUGCCAUCAUCGAAUGGCUAGUGCCUGAGGUGUUGGUUUUCGCCACCUCCCUGGGUUCGUAUCUCACGGUGAAGCGAGUGG ----.......(((((...--..))---))).((((((((..((((((...(((....)))(((((((.((((....))))((.....)).....))))))))))))).)))))))) ( -35.40, z-score = -2.20, R) >droSim1.chr2L 7956286 108 + 22036055 ----AUUAAUACUAUAUAU--UUUG---UAGGCCAUUUGCCAUCAUCGAAUGGCUGGUGCCUGAGGUGUUGGUUUUCGCCACCUCCCUGGGUUCGUAUCUCACGGUGAAGCGAGUGG ----.......(((((...--..))---))).((((((((..((((((...(((....)))(((((((.((((....))))((.....)).....))))))))))))).)))))))) ( -35.40, z-score = -1.84, R) >droYak2.chr2L 10805516 106 + 22324452 ----AUUAAUUCUAUAU----UUCG---UAGGCCAUUUGCCAUCAUUGAAUGGCUGGUGCCCGAGGUGCUGGUAUUCGCCACCUCACUGGGAUCAUAUCUCACCGUGAAGCGAGUGG ----.......((((((----((((---..(((.((..(((((......)))))..)))))))))))).)))(((((((....((((((((((...))))))..)))).))))))). ( -31.90, z-score = -0.77, R) >droEre2.scaffold_4929 17079493 112 + 26641161 ----AUUAAUUCUGUAUCUCAUUUGC-UUAGGCCAUUUGCUAUCAUUGAAUGGCUGGUGCCAGAGGUGCUGGUCUUCGCCACCUCCCUGGGAUCGUAUCUCACCGUGAAGCGAGUGG ----...............(((((((-((.((((((((.........))))))))(((.((((.((.(.((((....)))).).)))))).))).............))))))))). ( -37.10, z-score = -1.74, R) >dp4.chr4_group4 1607687 114 + 6586962 AUCACUCAUCCCGCUCUCUCCCAU---UCAGGCCCCUGGCCAUCAUUGAGUGGCUGGCCCCGGAGGUCCUGGUGUUUGCCACCUCCCUUGGCUCCUACCUCACCGUGAAGCGACUGG ...........((((.........---...((((...)))).(((((((((((..((((..((((((...(((....)))))))))...)))).))).))))..))))))))..... ( -35.60, z-score = -0.19, R) >droPer1.super_10 610911 114 + 3432795 AUCACUCAUCCCGCUCUCUCCCCU---UCAGGCCCCUGGCCAUCAUUGAGUGGCUGGCCCCGGAGGUCCUGGUGUUUGCCACCUCCCUUGGCUCCUACCUCACCGUAAAGCGACUGG ...........((((......(((---((.((((...((((((......))))))))))..)))))....((((...((((.......))))...)))).........))))..... ( -34.20, z-score = -0.28, R) >droWil1.scaffold_180703 2836554 102 + 3946847 ---------------UAUAAUCUUACCACAGACCAUUUGCCAUCAUUGAGUGGCUGGCACCGGAAAUUCUGGUAUUUGCCACAUCUUUGGGUUCAUAUCUCACGGUCAAACGUUUGU ---------------............((((((..((((((........(((((..(.(((((.....))))).)..))))).....((((.......)))).)).)))).)))))) ( -27.40, z-score = -1.75, R) >droMoj3.scaffold_6500 30774138 117 - 32352404 AUAAUUUACACCUUUCUCUUUUCUGCUCCAGACCCAUGGCCAUAAUUGAAUGGCUGGCACCCGAGGUCCUGGUGUUUGCCACGGCCUUGGCCUGUUUCCUCAGCGUCAAGCGCCUGG .......(((((..((((...((((...)))).(((..(((((......)))))))).....))))....)))))...(((.((((((((((((......))).)))))).)))))) ( -38.10, z-score = -1.88, R) >droVir3.scaffold_12963 9679860 112 + 20206255 ----GUUA-ACCUGUCUUUUUUUUUAAUCAGGCCCACAGCCAUCGUUGAGUGGCUGGCACCGGAGGUUUUGGUCUUUACCACGGCGCUGGCCUCGUAUCUCAGCGUGAAGCGCUUGG ----....-.((((..............)))).(((.((((..(((((((.(((..((.(((..(((..........))).))).))..)))......)))))))....).)))))) ( -36.74, z-score = -1.05, R) >droGri2.scaffold_15252 5068174 115 - 17193109 UUUAAUUGUUUUUAACUCUCUUUUGA--CAGACCCCUGGCCAUUGCUGAGUGGCUAACGCCCGAGGUUUUGGUCUUUGCCACCUCGCUGGGCUCAUAUCUCAGCGUGAAGAAAUUAG ..(((((.((((((((((..(..((.--(((....)))..))..)..))))(((....))).(((((...(((....))))))))((((((.......)))))).))))))))))). ( -30.70, z-score = -0.89, R) >consensus ____AUUAAUCCUAUCUCUCUUUUG___CAGGCCAUUUGCCAUCAUUGAAUGGCUGGCGCCGGAGGUGCUGGUCUUUGCCACCUCCCUGGGCUCGUAUCUCACCGUGAAGCGAGUGG ...............................(((....(((((......))))).)))....(((((..((((....))))..((....)).....)))))................ (-13.23 = -12.86 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:26 2011