| Sequence ID | dm3.chr2L |
|---|---|
| Location | 775,441 – 775,557 |
| Length | 116 |
| Max. P | 0.975751 |
| Location | 775,441 – 775,557 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 88.10 |
| Shannon entropy | 0.20546 |
| G+C content | 0.48543 |
| Mean single sequence MFE | -34.08 |
| Consensus MFE | -28.78 |
| Energy contribution | -29.46 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.94 |
| SVM RNA-class probability | 0.975751 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 775441 116 + 23011544 UUUUCUGUGUGCACUAGCCACACAGCAGGCAGGAAGUUCUAUCCAACUUUGCUCAACUUGAGUCAAGUCAUCGCUUUCUUCACUGAGUUUGCCUGCUUGCUUUCAUAC---ACUCUAGG .....(((((((....).))))))((((((((((((((......))))).(((((...((((..((((....))))..)))).)))))...)))))))))........---........ ( -32.00, z-score = -1.75, R) >droSim1.chr2L 775926 117 + 22036055 UUUUCUGUGUGCACUAGCCACACAGCAGGCAGGAAGUUCUAUCCAACUUUGCUCAACUUGAGUCAAGUCACCGCUUUCUUCACUGAGCU--CCUGCUUGCCUUCAUACCACCGUCUAGG .....(((((((....).))))))((((((((((...........((((.((((.....)))).))))....((((........)))))--)))))))))..........((.....)) ( -35.40, z-score = -2.87, R) >droSec1.super_14 745592 114 + 2068291 UUUUCUGUGUGCACUAGCCACACAGCAGGCAGGAAGUUCUAUCCAACUUUGCUCAACUUGAGUCAAGUCACCGCUUUCUUCACUGAGCU--CCUGCUUGCCUUCAUAC---CGUCUAGG .....(((((((....).))))))((((((((((...........((((.((((.....)))).))))....((((........)))))--))))))))).......(---(.....)) ( -35.40, z-score = -2.86, R) >droYak2.chr2L 758009 114 + 22324452 UUUUCUGUGUGCACUAGCCACGCAGCAGGCAGGAAGUUCUAUCCAACUUUACUCAACUUGAGUCAAGUCAUCGCUUUCUUUACUGAGCU--CCUGCUUGCCUUCGUAC---ACUUGAGG ..(((.((((((....((...)).((((((((((...........((((.((((.....)))).))))....((((........)))))--)))))))))....))))---))..))). ( -37.40, z-score = -3.23, R) >droEre2.scaffold_4929 828283 104 + 26641161 UUUUCCGUGUGCACUAGCCACGCAGCAGGCAGGAAGUUGUAUCCAAC----------UUGAGUCAAGUCAUCGCUUUCCUUGCCGAGCU--CCUGCUUGCCUUCAUAC---ACUUAAGG ....((((((((....).))))).(((((((((((((((....))))----------).(((..((((....))))..))).......)--)))))))))........---......)) ( -30.20, z-score = -1.56, R) >consensus UUUUCUGUGUGCACUAGCCACACAGCAGGCAGGAAGUUCUAUCCAACUUUGCUCAACUUGAGUCAAGUCAUCGCUUUCUUCACUGAGCU__CCUGCUUGCCUUCAUAC___ACUCUAGG ......((((((....).))))).(((((((((............((((.((((.....)))).))))....((((........))))...)))))))))................... (-28.78 = -29.46 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:49 2011