Locus 10899

Sequence ID dm3.chr3R
Location 17,367,528 – 17,367,581
Length 53
Max. P 0.797701
window14976

overview

Window 6

Location 17,367,528 – 17,367,581
Length 53
Sequences 6
Columns 53
Reading direction reverse
Mean pairwise identity 91.82
Shannon entropy 0.15944
G+C content 0.45876
Mean single sequence MFE -12.37
Consensus MFE -11.70
Energy contribution -11.48
Covariance contribution -0.22
Combinations/Pair 1.19
Mean z-score -1.24
Structure conservation index 0.95
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.72
SVM RNA-class probability 0.797701
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 17367528 53 - 27905053
CGUUGCUAAUUAGCGGAUGGCCCGACCUCAGGUCGUUAUAUCUAUUGGUUUUC
.......((((((..((((...(((((...)))))...))))..))))))... ( -12.60, z-score =  -0.91, R)
>droSim1.chr3R 23414731 53 + 27517382
CGUUGCUAAUUAGCGGAUGGCCCGACCUCAGGUCGUUAUAUCUAUUGGUUUUC
.......((((((..((((...(((((...)))))...))))..))))))... ( -12.60, z-score =  -0.91, R)
>droSec1.super_6 236319 52 + 4358794
CGUUGCUAAUUAGCGGAUGGCCCGACCUCAGGUCGUUAUAUCUAUUGGUUUC-
.......((((((..((((...(((((...)))))...))))..))))))..- ( -12.60, z-score =  -0.90, R)
>droYak2.chr3R 6196597 53 - 28832112
CGUUGCUAAUUAGCGGAUGGCCCGACCUUAGGUCGUUAUAUCUAUUGGUUUUC
.......((((((..((((...(((((...)))))...))))..))))))... ( -12.60, z-score =  -0.97, R)
>droEre2.scaffold_4770 13447543 53 + 17746568
CGUUGCUAAUUAGCGGAUGGCCCGACCUCAGGUCGUUAUAUCUAUUGGUUUUC
.......((((((..((((...(((((...)))))...))))..))))))... ( -12.60, z-score =  -0.91, R)
>droAna3.scaffold_13340 17706005 52 - 23697760
CGUUCCUAAUUAGC-AAUGUUUCGGCUUCUGGUCGUUAUAUCUAUUGGGUUUC
....((((((.((.-.((((..((((.....))))..)))))))))))).... ( -11.20, z-score =  -2.82, R)
>consensus
CGUUGCUAAUUAGCGGAUGGCCCGACCUCAGGUCGUUAUAUCUAUUGGUUUUC
....((((((....(((((...(((((...)))))...))))))))))).... (-11.70 = -11.48 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:35 2011