| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,357,298 – 17,357,390 |
| Length | 92 |
| Max. P | 0.509687 |
| Location | 17,357,298 – 17,357,390 |
|---|---|
| Length | 92 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 84.33 |
| Shannon entropy | 0.29679 |
| G+C content | 0.43730 |
| Mean single sequence MFE | -23.96 |
| Consensus MFE | -17.52 |
| Energy contribution | -17.19 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.509687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17357298 92 + 27905053 --CCAACGUAUCGAAUUAGUUCGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAGC----------GGCCAGACAAUUAUGGAUUAGAGCCAUUUGUUUUGG------------- --....(((((((((....)))))).........(((.(((((.....))))))))))----------).((((((((..((((.......))))))).)))))------------- ( -22.30, z-score = -1.44, R) >droSim1.chr3R 23405384 92 - 27517382 --CCAACGUAUCGAAUUAGUUCGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAGC----------GGCCAGACAAUUAUGGAUUAGAGCCAUUUGUUUUGG------------- --....(((((((((....)))))).........(((.(((((.....))))))))))----------).((((((((..((((.......))))))).)))))------------- ( -22.30, z-score = -1.44, R) >droSec1.super_6 226111 92 - 4358794 --CCAACGUAUCGAAUUAGUUCGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAGC----------GGCCAGACAAUUAUGGAUUAGAGCCAUUUGUUUUGG------------- --....(((((((((....)))))).........(((.(((((.....))))))))))----------).((((((((..((((.......))))))).)))))------------- ( -22.30, z-score = -1.44, R) >droYak2.chr3R 6187101 92 + 28832112 --CCAACGUAUCGAAUUAGUUCGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAGC----------GACCAGACAAUUAUGGAUUAGAGCCAUUUGUUUUGG------------- --....(((((((((....)))))).........(((.(((((.....))))))))))----------).((((((((..((((.......))))))).)))))------------- ( -22.40, z-score = -2.04, R) >droEre2.scaffold_4770 13437435 92 - 17746568 --GCAACGUAUCGAAUUAGUUCGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAGC----------GACCAGACAAUUAUGGAUUAGAGCCAUUUGUUUUGG------------- --((....(((((((....)))))))........(((.(((((.....))))))))))----------..((((((((..((((.......))))))).)))))------------- ( -23.50, z-score = -2.21, R) >droAna3.scaffold_13340 17695828 95 + 23697760 CCACCACGUAUCGAAUUAGUUUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAGC----------GGCCAGACAAUUAUGGAUUAGUGCCAUUUGUUCUGGC------------ ......(((((((((....)))))).........(((.(((((.....))))))))))----------)(((((((((..((((.......))))))).))))))------------ ( -26.00, z-score = -1.85, R) >dp4.chr2 3657903 96 + 30794189 CCGCCACGUAUCGAAUUAGUCUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAACG---------GCCCAGACAAUUAUGGAUUAGUGCCAUUUGUUCCGAG------------ ..(((............(((((....)))))..((((.(((((.....))))))))).)---------))...(((((..((((.......))))))))).....------------ ( -19.90, z-score = -0.37, R) >droPer1.super_7 3753029 96 - 4445127 CCGCCACGUAUCGAAUUAGUCUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAACG---------GCCCAGACAAUUAUGGAUUAGUACCAUUUGUUCCCAG------------ ..(((............(((((....)))))..((((.(((((.....))))))))).)---------))...(((((..((((.......))))))))).....------------ ( -19.70, z-score = -0.80, R) >droWil1.scaffold_181130 4139160 95 - 16660200 UCUCCACGUAUCGAAUUAGUUUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAAC----------GGCCAGACAAUUAUGGAUUAGUGCCAUUUGUUUGUGG------------ ...((((.(((((((....)))))))....(..((((.(((((.....))))))))).----------.)..((((((..((((.......))))))))))))))------------ ( -22.70, z-score = -0.97, R) >droVir3.scaffold_13047 4660156 115 - 19223366 --UCCACGUAUCGAAUUAGUUUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAACAGCAGCGCCUGGCCAGACAAUUAUGGAUUAGUACCAUUUGUUUUUGGUUGGCUAAGUGA --..(((.(((((((....))))))).......((((.(((((.....))))))))).......(((.((((((((((..((((.......)))))))))..))))))))...))). ( -29.80, z-score = -1.11, R) >droMoj3.scaffold_6540 16139409 100 - 34148556 --UCCACGUAUCGAAUUAGUUUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAACAGCAGCGGCUGGCCAGACAAUUAUGGAUGAGUACCAUUUGUUUU--------------- --((((..(((((((....))))))).......((((((((((.....)))))....((((....))))))))).......)))).................--------------- ( -22.90, z-score = -0.61, R) >droGri2.scaffold_14830 5406451 114 + 6267026 ---CCACGUAUCGAAUUAGUUUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAACGGCAGCGACUGGCCAGACAAUUAUGGAUUAGUACCAUUUGUUUUUGGCCAGCAAAGUGA ---.(((.(((((((....)))))))....(..((((.(((((.....)))))))))..)....(.((((((((((((..((((.......)))))))))..))))))))...))). ( -33.70, z-score = -2.64, R) >consensus __CCCACGUAUCGAAUUAGUUUGAUGAGAUUUAUUGGCUCAAGUCCCACUUGACCAAC__________GGCCAGACAAUUAUGGAUUAGUGCCAUUUGUUUUGG_____________ ........(((((((....))))))).......((((.(((((.....)))))))))................(((((..((((.......)))))))))................. (-17.52 = -17.19 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:28 2011