| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,356,510 – 17,356,608 |
| Length | 98 |
| Max. P | 0.763384 |
| Location | 17,356,510 – 17,356,608 |
|---|---|
| Length | 98 |
| Sequences | 9 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.34 |
| Shannon entropy | 0.42074 |
| G+C content | 0.43159 |
| Mean single sequence MFE | -27.27 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.53 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763384 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17356510 98 - 27905053 -----AGACAUCGACAUAUGCGUGCACUUUGACCUCGAGGUGAU-U-CGCAUCU-GCAAAUAUUGUUUGGCACGCCGAGCGG-UUUUGGAUUUUAUUCAUGCAUCAU -----.(.(((.((((.(((((..(((((((....)))))))..-.-))))).)-)((((.(((((((((....))))))))-)))))........))))))..... ( -28.70, z-score = -1.37, R) >droSim1.chr3R 23404626 92 + 27517382 -----------CGACAUAUGCGUGCACUUUGACCUCGAGGUGAU-U-CGCAUCU-GCAAAUAUUGUUUGGCACGCCGAGCGG-UUUUGGAUUUUAUUCAUGCAUCAU -----------.((((.(((((..(((((((....)))))))..-.-))))).)-)((((.(((((((((....))))))))-)))))...............)).. ( -27.80, z-score = -1.49, R) >droSec1.super_6 225343 94 + 4358794 ---------AUCGGCAUAUGCGUGCACUUUGACCUCGAGGUGAU-U-CGCAUCU-GCAAAUAUUGUUUGGCACGCCGAGCGG-UUUUGGAUUUUAUUCAUGCAUCAU ---------....(((((((((..(((((((....)))))))..-.-)))))..-.((((.(((((((((....))))))))-)))))..........))))..... ( -30.40, z-score = -1.78, R) >droYak2.chr3R 6186320 103 - 28832112 CAUAUGUCGGUGUGUGUAUGCGUGCACUUUGACCUCGAGGUGAU-U-CGCAUCU-GCAAAUAUUGUUUGGCACGCCGAGCGG-UUUUGGAUUUUAUUCACGCAUCAU ........((((((((.(((((..(((((((....)))))))..-.-)))))..-.((((.(((((((((....))))))))-))))).........)))))))).. ( -37.50, z-score = -2.79, R) >droEre2.scaffold_4770 13436692 92 + 17746568 -----------CGACAUAUGCGUGCACUUUGACCUCGAGGUGAU-U-CGCAUCU-GCAAAUAUUGUUUGGCACGCCGAGCGG-UUUUGGAUUUUAUUCACGCAUCAU -----------......((((((((((((((....)))))))..-.-.......-.((((.(((((((((....))))))))-))))).........)))))))... ( -28.20, z-score = -1.73, R) >droAna3.scaffold_13340 17695093 95 - 23697760 -----------AAACAUAUGCGUGCACUUUGACCUCGAGGUGAUAUUCGCAUCG-GCAAAUAUUGUUUGGCACACCGAGUGGUUUUUGGAUAUUAUUCAUGCAUCAU -----------......((((((((((((((....)))))))((((((((....-))(((.((..(((((....)))))..)).)))))))))....)))))))... ( -26.10, z-score = -1.45, R) >dp4.chr2 3657096 103 - 30794189 ---CGCAACAUAUGUAUGCACGUGCACUUUGACCUCGAGGUGAU-UCCGCCUCUGGAAAAUAUUGUUUGGCACGCCGAACGGUUUUUGGAUUUUAUUCAUGCAUCAU ---.(((((....)).)))..(((((...(((((..((((((..-..)))))).)).(((.(((((((((....))))))))).))).........))))))))... ( -28.60, z-score = -1.32, R) >droPer1.super_7 3752222 99 + 4445127 ---CGCAACA----UAUGCACGUGCACUUUGACCUCGAGGUGAU-UCCGCCUCUGGAAAAUAUUGUUUGGCACGCCGAACGGUUUUUGGAUUUUAUUCAUGCAUCAU ---.(((...----..)))..(((((...(((((..((((((..-..)))))).)).(((.(((((((((....))))))))).))).........))))))))... ( -27.80, z-score = -1.53, R) >droWil1.scaffold_181130 4138413 76 + 16660200 -------------AUACAUACAUGCACUUUGACCUCAAGUCUAU-----------ACAAAUAUUUUUCAGCACAAU-------UUUUGAAACUUAUUUAUGCAUCAU -------------........(((((....(((.....)))...-----------..(((((..((((((......-------..))))))..))))).)))))... ( -10.30, z-score = -2.34, R) >consensus ___________CGACAUAUGCGUGCACUUUGACCUCGAGGUGAU_U_CGCAUCU_GCAAAUAUUGUUUGGCACGCCGAGCGG_UUUUGGAUUUUAUUCAUGCAUCAU ....................(((((((((((....)))))))..............((((..((((((((....))))))))..)))).........))))...... (-15.10 = -15.53 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:24 2011