| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,170,984 – 8,171,075 |
| Length | 91 |
| Max. P | 0.809616 |
| Location | 8,170,984 – 8,171,075 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 82.80 |
| Shannon entropy | 0.27875 |
| G+C content | 0.48786 |
| Mean single sequence MFE | -22.38 |
| Consensus MFE | -18.66 |
| Energy contribution | -19.22 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809616 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8170984 91 - 23011544 AAAAAUCGAAUGGCACACGUGUUGCUUCUAUGCU-UUGGGGCUUGAUUAUGGGCCUACACAGACAUUCCAAGGCACACACACACACACACAC ..................(((((((((..(((((-.((((((((......)))))).)).)).)))....))))).))))............ ( -19.80, z-score = -1.07, R) >droSim1.chr2L 7953663 79 - 22036055 -AAAAUCGAAUGGCACACGUGUUGCUUCUAUGCUCUUGGGGCUUGAUUAUGGGCCUGCACAGGCAUUCCAAGGCACACAC------------ -.................((((.((((..(((((..((((((((......)))))).))..)))))....))))))))..------------ ( -22.40, z-score = -0.78, R) >droSec1.super_3 3668170 79 - 7220098 -AAAAUCGAAUGGCACACGUGUUGCUUCUAUGCUUUUAGGGCGUGAUUAUGGGCCUGCACAGGCAUUUCAAGGCACACAC------------ -.................((((.((((..((((((...((((.(......).))))....))))))....))))))))..------------ ( -20.60, z-score = -0.62, R) >droYak2.chr2L 10802870 72 - 22324452 -GAAAUCGAAUGGGACACGUGUUGCUUCUAUGCU-UUGGGGC----CUUUGAGCCUA--AAGGCAUUCCAAAGCACACAC------------ -......(((.(.(((....))).))))..((((-((((.((----(((((....))--)))))...)))))))).....------------ ( -23.80, z-score = -2.56, R) >droEre2.scaffold_4929 17076977 75 - 26641161 -AAAAUCGAAUGGGACACGUGUUGCUUCUAUGCU--UGGGGCUUGAUUAUGGGCCUG--CAGGCAUUCCAAAGCACACAC------------ -.................((((.((((..(((((--((((((((......)))))).--)))))))....))))))))..------------ ( -25.30, z-score = -2.40, R) >consensus _AAAAUCGAAUGGCACACGUGUUGCUUCUAUGCU_UUGGGGCUUGAUUAUGGGCCUGCACAGGCAUUCCAAGGCACACAC____________ ..................((((.((((..(((((....((((((......)))))).....)))))....)))))))).............. (-18.66 = -19.22 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:25 2011