| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,335,636 – 17,335,729 |
| Length | 93 |
| Max. P | 0.904514 |
| Location | 17,335,636 – 17,335,729 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 67.64 |
| Shannon entropy | 0.61771 |
| G+C content | 0.48168 |
| Mean single sequence MFE | -29.98 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.28 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.904514 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17335636 93 + 27905053 ---------GCCGUUCCCUUGGGAUCUU------GGCCU--GAAAGCUCCUUGGACGCCUUGGCCAG----UCAAUUGAUGGUCUGGCUAAAUUGUUAUGUCUUUGGGGAUAAU ---------((((.(((....)))...)------)))..--.....((((..((((((.((((((((----(((.....))).))))))))...))...))))..))))..... ( -31.10, z-score = -1.60, R) >droSim1.chr3R 23384183 93 - 27517382 ---------GCCAUUCCCUUGGGAUCUU------GGCCU--GGAAGCUCCUUGGACGCCUUGGCCAG----UCAAUUGAUGGUCUGGCUAAAUUGUUAUGUCUUGGGGGAUAAU ---------((((.(((....)))...)------)))..--.....(((((.((((((.((((((((----(((.....))).))))))))...))...)))).)))))..... ( -32.50, z-score = -1.19, R) >droSec1.super_6 204821 93 - 4358794 ---------GCCAUUCCCUUGGGAUCUU------GGCCU--GUAAGCUCCUUGGACGCCUUGGCCAG----UCAAUUGAUGGUCUGGCUAAAUUGUUAUGUCUUGAGGGAUAAU ---------.....(((((..((((...------(((.(--.((((...)))).).)))((((((((----(((.....))).))))))))........))))..))))).... ( -33.20, z-score = -2.31, R) >droYak2.chr3R 6170625 93 + 28832112 ---------GCCAUUCCCUCGGGAUCUC------GGCCU--GGUUGCUUCUUGGACGUCUUGGGCAG----CCAAUUGAUGGUCUGGCUAAAUUGUUAUGUCUUGGGGGAUAAU ---------.....(((((((((((...------(((((--((((((((...((....)).))))))----)))......))))((((......)))).))))))))))).... ( -32.40, z-score = -1.44, R) >droEre2.scaffold_4770 13415568 93 - 17746568 ---------GCCAAUCCCUCGGGACCUC------GGCCU--GGAUGCUCCUUGGACGCCUUGGGCAG----UCAAUUGAUGGUCUGCCUAAACUGUUAUGUCUUGGGGGAUAAU ---------....((((((((((((..(------((((.--((.....))..)).....((((((((----(((.....))).)))))))).)))....))))))))))))... ( -35.80, z-score = -2.00, R) >droAna3.scaffold_13340 17674233 99 + 23697760 ---------GCCAGUCCCUCGGGAUCCUUGGG--GGCUUUGGAAAGCUCCUUGGCCGCCUUGGGCAG----UCAAUUAAUGGCCUGACUAAAUUGUUAUGUCUUGAAAGAUAAU ---------(((.((((....)))).(..((.--((((..(((....)))..)))).))..)))).(----((..((((.(((.((((......)))).)))))))..)))... ( -33.70, z-score = -1.17, R) >dp4.chr2 10775690 83 + 30794189 ---------GGCAGGUCCCCGGGGACCG------GGCCA------------CCAGCUCCUUGGCCAG----UCAAUUAAUGGUCUGGCUAAAUUGUUAUGUCUUGAAAGAUAAU ---------(((.(((((....))))).------.))).------------..(((...((((((((----(((.....))).))))))))...))).(((((....))))).. ( -32.20, z-score = -2.16, R) >droPer1.super_0 2123598 83 - 11822988 ---------GGCAGGUCCCCGGGGACUU------GGCCA------------CCAGCUCCUUGGCCAG----UCAAUUAAUGGUCUGGCUAAAUUGUUAUGUCUUGAAAGAUAAU ---------(((((((((....))))))------.))).------------..(((...((((((((----(((.....))).))))))))...))).(((((....))))).. ( -30.30, z-score = -2.06, R) >droWil1.scaffold_181089 8203538 114 + 12369635 AACCCAAGAAGAAAUCCCAAAGGAAUUGCAACUUGGACUUUGGGCUGCCUUUUUUUGGGUUAGCCAGGCCCCCAAUUAAUGGUCUGACUAAAUUGUUAUGUCUUGAAAGAUAAU .(((((((((((...(((((((...............))))))).....)))))))))))(((.((((((..........)))))).)))........(((((....))))).. ( -31.96, z-score = -1.45, R) >droGri2.scaffold_15074 2850771 72 + 7742996 ----------CAAGUCCCACAGGAAUAAA-------CAA---------------------AUGCCAG----CCAAUUAAUGGUCUAGCUAAAUUGUUAUGUCUCGCAAGAUAAG ----------....(((....)))...((-------(((---------------------..((.((----(((.....))).)).))....))))).....((....)).... ( -11.50, z-score = -0.84, R) >droMoj3.scaffold_6540 538902 71 - 34148556 ----------CAAGUCCUGCGGGACUUG--------CUG---------------------GGGCCAG----CCAAUUAAUGGACUGGCUAAAUUGUUAUGUCUUGAAAGAUAAU ----------(((((((....)))))))--------...---------------------.((((((----(((.....))).)))))).........(((((....))))).. ( -25.10, z-score = -3.23, R) >consensus _________GCCAGUCCCUCGGGAUCUU______GGCCU__G_A_GCUCCUUGGACGCCUUGGCCAG____UCAAUUAAUGGUCUGGCUAAAUUGUUAUGUCUUGAAAGAUAAU ..............(((....)))...................................((((((((....(((.....))).)))))))).......(((((....))))).. (-12.10 = -12.28 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:22 2011