| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,333,595 – 17,333,657 |
| Length | 62 |
| Max. P | 0.735323 |
| Location | 17,333,595 – 17,333,657 |
|---|---|
| Length | 62 |
| Sequences | 10 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 81.20 |
| Shannon entropy | 0.39641 |
| G+C content | 0.44913 |
| Mean single sequence MFE | -19.56 |
| Consensus MFE | -7.67 |
| Energy contribution | -7.87 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.735323 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17333595 62 - 27905053 GGGGCU--GGGUGCUGUUCAUUUAAUGUGCUCAUGCAUAUUGUAUAAGCCAUUUGCUCCCCGUU (((((.--.(((..(((.....((((((((....)))))))).))).)))....)))))..... ( -19.30, z-score = -1.34, R) >droPer1.super_0 2121397 62 + 11822988 GGAGCU--GCGAGUUUUUCAUUUAAUGUGCUCAUGCAUAUUGAAUGAGCCAUUUACUCCCCGCU ..(((.--(.((((..((((((((((((((....))))))))))))))......)))).).))) ( -21.90, z-score = -4.32, R) >dp4.chr2 10773504 62 - 30794189 GGAGCU--GCGAGUUUUUCAUUUAAUGUGCUCAUGCAUAUUGAAUGAGCCAUUUACUCCCCGCU ..(((.--(.((((..((((((((((((((....))))))))))))))......)))).).))) ( -21.90, z-score = -4.32, R) >droAna3.scaffold_13340 17672220 64 - 23697760 GGGGCUGCGAGUGCUGCUCAUUUAAUGUUCUCAUGAAUUUUUUAUAAGCCAUUUACUCCCUGUU ((((..(..((((..(((.((..((.((((....)))).))..)).)))))))..).))))... ( -13.70, z-score = -0.91, R) >droEre2.scaffold_4770 13413577 61 + 17746568 GGGGCU---GGUGCUGUUCAUUUAAUGUGCUCAUGCAUAUUGUAUGAGCCAUUUGCUCCCCGUU (((((.---.(((..((((((.((((((((....)))))))).)))))))))..)))))..... ( -25.90, z-score = -4.09, R) >droYak2.chr3R 6168547 62 - 28832112 GGGGCU--GGGUGCUGUUCAUUUAAUGUGCCCAUGCAUAUUGUAUGAGCUAUUUGCUCGCCGUU ..(((.--(((((..((((((.((((((((....)))))))).))))))....))))))))... ( -22.90, z-score = -2.27, R) >droSec1.super_6 202820 62 + 4358794 GGGGCU--GGGCGCUGUUCAUUUAAUGUGCUCAUGCAUAUUGUAUGAGCCAUUUGCUCCCCGUU ((((..--.((((..((((((.((((((((....)))))))).))))))....))))))))... ( -25.40, z-score = -3.04, R) >droSim1.chr3R 23382178 62 + 27517382 GGGGCU--GGGCGCUGUUCAUUUAAUGUGCUCAUGCAUAUUGUAUGAGCUAUUUGCUCCCCGUU ((((..--.((((..((((((.((((((((....)))))))).))))))....))))))))... ( -26.10, z-score = -3.79, R) >droGri2.scaffold_15074 2847896 62 - 7742996 GCCGCC--UGCUCUUUUUCAUUUAAUGUGCUUAUGCAUAAUGGAUAAACCUUUUACCCCCAGUU ......--...........(((((.(((((....))))).)))))................... ( -7.00, z-score = -0.24, R) >droMoj3.scaffold_6540 534383 60 + 34148556 GAGGUU--UGCGCUUUUUCAUUUAAUGUGCUCAUGCAUAAUGGAAAAACCUUUUACCCCCAG-- ((((((--(......((((((....(((((....))))))))))))))))))..........-- ( -11.50, z-score = -1.18, R) >consensus GGGGCU__GGGUGCUGUUCAUUUAAUGUGCUCAUGCAUAUUGUAUGAGCCAUUUACUCCCCGUU ((((........(((.......((((((((....))))))))....)))......))))..... ( -7.67 = -7.87 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:22 2011