| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,327,308 – 17,327,367 |
| Length | 59 |
| Max. P | 0.933777 |
| Location | 17,327,308 – 17,327,367 |
|---|---|
| Length | 59 |
| Sequences | 7 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 72.41 |
| Shannon entropy | 0.49720 |
| G+C content | 0.54717 |
| Mean single sequence MFE | -20.93 |
| Consensus MFE | -11.75 |
| Energy contribution | -10.39 |
| Covariance contribution | -1.36 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933777 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17327308 59 + 27905053 -GACAUUGGGGUCCAUUUG---GGGCUCAAUCUGGAGUUGGAUCUUCGGCUUGAAUGCCGGAC -....(((((.(((....)---)).)))))(((((.(((.((.(....).)).))).))))). ( -19.50, z-score = -1.37, R) >droPer1.super_0 2115419 63 - 11822988 GAGCCUCCAAAUGGACCUAAACGGGUUCGGAUACGAGUUCGAUCUUGGGCUCGGUGGCUGGAC .((((.((...(((((((....))))))).....(((((((....))))))))).)))).... ( -24.60, z-score = -2.39, R) >dp4.chr2 10767580 63 + 30794189 GAGCCUCCAAAUGGACCUAAACGGGUUCGGAUACGAGUUCGAUCUUGGGCUCGGUGGCUGGAC .((((.((...(((((((....))))))).....(((((((....))))))))).)))).... ( -24.60, z-score = -2.39, R) >droEre2.scaffold_4770 13407426 58 - 17746568 --GGCUUUGGGUCCAUUUG---GGGUUCAAUCUGGAGUUGGAUCUUCGGCUUGCAUGCCGGAC --.......(((((((((.---((((...)))).))).))))))((((((......)))))). ( -19.20, z-score = -1.28, R) >droYak2.chr3R 6162488 59 + 28832112 -GAGUUUUGGGUCCAUUUG---GGGUUCAAUCUGGAGUUGGAUCUGCGGCUUGAAUGCUGGAC -.......((((((((((.---((((...)))).))).))))))).((((......))))... ( -16.90, z-score = -1.26, R) >droSec1.super_6 196647 59 - 4358794 -GACAUUGGGGUCCAUUUG---GGGUUCAAUCUGGAGUUGGAUCUUCGGCUUGAAUGCCGGAC -(((......)))..((((---(.((((((.((((((......)))))).)))))).))))). ( -20.30, z-score = -1.82, R) >droSim1.chr3R 23375941 59 - 27517382 -GACAUUGGGGUCCAUUUG---GGGCUCAAUCUGGAGUUGGAUCUCCGGCUUGAAUGCCGGAC -........(((((((((.---(((.....))).))).))))))((((((......)))))). ( -21.40, z-score = -1.52, R) >consensus _GACAUUGGGGUCCAUUUG___GGGUUCAAUCUGGAGUUGGAUCUUCGGCUUGAAUGCCGGAC .......................(((((((.((((((......)))))).))))..))).... (-11.75 = -10.39 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:19 2011