| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,311,882 – 17,311,972 |
| Length | 90 |
| Max. P | 0.662748 |
| Location | 17,311,882 – 17,311,972 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 65.29 |
| Shannon entropy | 0.66401 |
| G+C content | 0.52572 |
| Mean single sequence MFE | -33.49 |
| Consensus MFE | -12.53 |
| Energy contribution | -13.00 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662748 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17311882 90 - 27905053 ------UUGCUGCUG-CCUUGGCUGCCAAUU--UUGCGGCCAGACUUUUUCCUUGG------------------GGCUUCAAAGGUGACAUGGAGUCAGAUCCAAAGAUAUCUGGCG ------........(-((((((((((.....--..))))))))......((.((((------------------(((((((..(....).)))))))....)))).)).....))). ( -28.50, z-score = -0.40, R) >droSim1.chr3R 23360668 90 + 27517382 ------UUGCUGCUG-CCUUGGCUGCCAAUU--UGGCGGCCAGACUUUUUCCUUGG------------------GGCUUCAAAGGUGACAUGGAGUCAGACCCAAAGAUAUCUGGCG ------........(-(((((((((((....--.)))))))))......((.((((------------------(((((((..(....).))))))....))))).)).....))). ( -34.40, z-score = -1.81, R) >droSec1.super_6 181618 90 + 4358794 ------UUGCUGCUG-CCUUGGCUGCCAAUU--UGGCGGCCAGACUUUUUCCUUGG------------------GGCUUCAAAGGUGACAUGGAGUCAGACCCAAAGAUAUCUGGCG ------........(-(((((((((((....--.)))))))))......((.((((------------------(((((((..(....).))))))....))))).)).....))). ( -34.40, z-score = -1.81, R) >droYak2.chr3R 6146938 90 - 28832112 ------UUGCUGCAG-UCUUGGCUGCCAAUU--UGGCGGCCAGACUUCUUCCUUGU------------------GGCUUCAAGGGCGACAUGGAUUCAGAGCCAAAGAUAUCUGGCG ------...(((.((-(((.(((((((....--.))))))))))))...(((.(((------------------.(((.....))).))).)))..))).((((........)))). ( -37.80, z-score = -2.81, R) >droEre2.scaffold_4770 13391306 90 + 17746568 ------UUGCUGCAG-UCUUGGCUGCCAAUU--UGGCGGCCAGACUUCUUCCUUGU------------------GGCUUCAAAGGUGACAUGGAUUCAGACCCAAAGAUAUCUGGCG ------.....((((-(((.(((((((....--.))))))))))))...(((.(((------------------.(((.....))).))).)))..((((..........)))))). ( -32.70, z-score = -2.07, R) >droAna3.scaffold_13340 17653831 90 - 23697760 ------UUGAUGAAG-CUUUGGCUGCUAAUU--UGGCGGCCAGAGUUUUGCCUUGA------------------GGCUUCCAAGGUGACAAGGAGUCGCAGUCAAAAAUAUUGGGUG ------(((((((((-(((((((((((....--.)))))))))))))))(((....------------------))).......(((((.....))))).)))))............ ( -35.10, z-score = -3.25, R) >dp4.chr2 10753099 96 - 30794189 CUGCAGUUGAGGUGG-UUUUGGCCGCUAAUU--UGGCGGCUAGACUUUUGGCCUGC------------------GGUUUGCAUGGUGACACAGAGUCGCAAUCAAAGAUGUCUGGUG ..(((.(((((((.(-.((((((((((....--.))))))))))....).)))(((------------------(..((...((....))..))..)))).))))...)))...... ( -33.00, z-score = -1.20, R) >droPer1.super_0 2099995 96 + 11822988 GUGCAGUUGAGGUGG-UUUUGGCCGCUAAUU--UGGCGGCUAGACUUUUGGCCUGU------------------GGUUUGCAUGGUGACACAGAGUCGCAAUUAAAGAUGUCUGGUG ((((((...((((.(-.((((((((((....--.))))))))))....).))))..------------------...))))))(....).(((((((.........))).))))... ( -30.90, z-score = -1.13, R) >droWil1.scaffold_180745 1792724 91 - 2843958 ---------UUGUGACUUUUGGCAGCCAAUU--UUGCAGCCAAACUUUUCUUUAAAGUC---------------GGCUUACAGGGCGACAAUGAUUCGUCUGCAAAGAGAUCCGGAG ---------(((.(((((((.((((((....--....((((..(((((.....))))).---------------)))).....)))(((........)))))).))))).))))).. ( -21.32, z-score = 0.09, R) >droVir3.scaffold_12875 2064353 108 - 20611582 ------CAGCCGUGG-AUUUGGCGGCCAGUU--UGGCGGCUAAGCUUCUGGCUGGAGCAGGCGCUGUUGUUGCGGGCUUGCAGGGCGACAUGGAGUCCUCCGAGAACAGAUCAGGCG ------..(((...(-(((((..((((((..--.(((......))).))))))(((((((((.((((....)))))))))).((((........))))))).....)))))).))). ( -49.30, z-score = -1.78, R) >droMoj3.scaffold_6496 3675264 102 + 26866924 ------CAACUGUGG-AUUUUGCUGCUAAUU--UGGCGGCUAAGCUCAUAGCUGGAGCAGUCGUUGUU------GGCUUCCAAGGCGAUGAGGAAUCCUCUGCGAAGAUGUCAGGAG ------...(((.((-((((.((((((....--.))))))....(((((.((((((..(((((....)------)))))))..))).)))))))))))(((....)))...)))... ( -31.90, z-score = -0.16, R) >droGri2.scaffold_15112 4183901 92 - 5172618 ----------CGGGG-AUUGAGCUACCUCCUGCUUGCUGGCAGGCGUUUCAGGUGCCUUC--------------GGUUUCCAUGGUGAGCUGGACUCAUCCGCAAAGAGAUCGGGCG ----------.((..-(((((((.((((((((((....))))))......))))))..))--------------)))..)).......(((.(((((.........))).)).))). ( -32.60, z-score = 0.13, R) >consensus ______UUGCUGCGG_UUUUGGCUGCCAAUU__UGGCGGCCAGACUUUUUCCUUGA__________________GGCUUCCAAGGUGACAUGGAGUCAGACCCAAAGAUAUCUGGCG ..................((((((((((.....))))))))))...........................................(((.....))).................... (-12.53 = -13.00 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:17 2011