| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,307,681 – 17,307,795 |
| Length | 114 |
| Max. P | 0.902051 |
| Location | 17,307,681 – 17,307,795 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 75.55 |
| Shannon entropy | 0.44023 |
| G+C content | 0.42494 |
| Mean single sequence MFE | -31.46 |
| Consensus MFE | -19.86 |
| Energy contribution | -19.34 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.902051 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17307681 114 + 27905053 CAACUUAGUCACUGUUUAAAAUUGGCGCGCUUUUAUUUGAAUUUAAGUGUUUGGCAAACAUAUAC-ACAGUGGCGCCAUCUGGAGCAGUGCUGCCACUCUCGUAUUUGGCACCAU ......((.((((((((.....(((((((((..((((((....))))))...)))...(((....-...)))))))))....))))))))))((((..........))))..... ( -33.10, z-score = -1.72, R) >droEre2.scaffold_4770 13387067 106 - 17746568 --ACUUCUUCACAGUUUGAAACUGGCGCAUUUUUUU----AUUUGAAUAGGUGUUAUA-AUAAUU--AGGUGGCGCCAUCUGGAUAAGUGCUGCCACUUUAUUAUCUGCAGUCAU --.........(((....(((.((((((((....((----((((..((.((((((((.-......--..))))))))))..)))))))))).)))).))).....)))....... ( -23.60, z-score = -0.59, R) >droYak2.chr3R 6142783 113 + 28832112 -CAACCUUUCACUGUUUGAAACUGGCGCACUUUUAUUUGAAUA-AAGUGUUUGCCCAAGGUAAGCAGCAGUGGCGCCAUCUGGACGAGUGCUGCCACUUUAGUAUCUGCCGCCAU -.....(((((.....))))).(((((((.........((.((-(((((.(((((...)))))((((((.(.(..((....)).).).)))))))))))))...)))).))))). ( -29.90, z-score = 0.05, R) >droSec1.super_6 177433 106 - 4358794 --------CAAAUGUUUGAAAUUGGCGCACUUUUAUUUGAAUUUAAGUGCUCGUCAAAUAUAUAC-GAAGUGGCGCCAUCUGGAGCAGUGCUGCCACUCUUGUAUUUGGCGCCAU --------..............((((((((((..((....))..))))))..((((((((((...-((.((((((.((.(((...))))).)))))))).)))))))))))))). ( -36.40, z-score = -3.35, R) >droSim1.chr3R 23356481 106 - 27517382 --------UAACUGUUUGAAAUUGGCGCACUUUUAUUUGAAUUUAAGUGCUUGUCAAACAUAUAC-GAAGUGGCGCCAUCUGGAGCAGUGCUGCCACUCUUGUAUUUGGCGCCAU --------..............((((((((((..((....))..))))))..(((((....((((-(((((((((.((.(((...))))).))))))).))))))))))))))). ( -34.30, z-score = -2.64, R) >consensus __A_____UCACUGUUUGAAAUUGGCGCACUUUUAUUUGAAUUUAAGUGCUUGUCAAACAUAUAC_GAAGUGGCGCCAUCUGGAGCAGUGCUGCCACUCUAGUAUUUGGCGCCAU ......................((((((((((............))))))..................(((((((.((.((.....)))).)))))))............)))). (-19.86 = -19.34 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:17 2011