| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,294,902 – 17,294,993 |
| Length | 91 |
| Max. P | 0.682449 |
| Location | 17,294,902 – 17,294,993 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 64.77 |
| Shannon entropy | 0.69557 |
| G+C content | 0.48249 |
| Mean single sequence MFE | -24.71 |
| Consensus MFE | -12.04 |
| Energy contribution | -12.10 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.682449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17294902 91 - 27905053 ---------AUUUGUUGGUUUUUUUUUUUUUGUCGGGGAGAGCGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUCUUGGCGUGUGGUAGGGCCCG------------ ---------........................((((....((.((((((((((.(((((..((......))..))))).))))))))))))....))))------------ ( -24.30, z-score = -0.55, R) >droSim1.chr3R 23343459 85 + 27517382 ---------AUUUGUUGGUUU----UUUUUUGUUGGGGAGAGCGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUCUUGGCGUGUGGUAGGGCC-------------- ---------........((((----(((((....))))))))).((((((((((.(((((..((......))..))))).))))))))))........-------------- ( -22.40, z-score = -1.07, R) >droSec1.super_6 164783 86 + 4358794 ---------AUUUGUUGGUUU---UUUUUUUGUUGGGGAGAGUGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUCUUGGCGUGUGGUAGGGCC-------------- ---------.......(((((---((((((....)))))))...((((((((((.(((((..((......))..))))).))))))))))....))))-------------- ( -19.80, z-score = -0.61, R) >droYak2.chr3R 6130004 84 - 28832112 ---------AUUUGUUGGUUU-----UUUUUAUCGGGGAGAGCGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUCUUGGCGUGUGGUAGGGCC-------------- ---------........((((-----((((.....)))))))).((((((((((.(((((..((......))..))))).))))))))))........-------------- ( -21.70, z-score = -0.68, R) >droEre2.scaffold_4770 13374476 82 + 17746568 ---------AUUUGUUGGUUU-------UUUGUCGGGGAGAGCGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUCUUGGCGUGUGGUAGGGCC-------------- ---------........((((-------(((.....))))))).((((((((((.(((((..((......))..))))).))))))))))........-------------- ( -20.90, z-score = -0.28, R) >droAna3.scaffold_13340 17637730 88 - 23697760 ---------AUUUGGUACAUU-UUUUUAGUGGUGAUGGAGAGAACGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGCUGGUGGCGUGUGGUAGGGCA-------------- ---------......(((.((-((((((.......)))))))).(((((((((..(((((..((......))..)))))..)))))))))))).....-------------- ( -24.20, z-score = -1.90, R) >dp4.chr2 10736268 111 - 30794189 UCCCCGUCCAGCGGAUACUUU-UGUGGCACGGAGAGAGUGCCAGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUGUUGGCGUGCGGUGUGGCAGUAUGGCAACGUGG ((.(((((((.((((....))-))))).)))).))...(((((.((((((((((.(((((..((......))..))))).))))))))))...))))).((((....)))). ( -41.10, z-score = -1.32, R) >droPer1.super_0 2080166 111 + 11822988 UCCCCGUCCAGCGGAUACUUU-UGUGGCACGGAGAGAGUGCCAGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUGUUGGCGUGCGGUGUGGCAGUAUGGCAACGUGG ((.(((((((.((((....))-))))).)))).))...(((((.((((((((((.(((((..((......))..))))).))))))))))...))))).((((....)))). ( -41.10, z-score = -1.32, R) >droWil1.scaffold_181089 8163586 79 - 12369635 ----------UUUCACCUAUU--UCUUUUUGUUAGUGGCGCGCGCUCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUCGCUAUCGUGGGG--------------------- ----------.....(((((.--............(((((((....)))))))..(((((..(((.......)))..)))))...))))).--------------------- ( -20.30, z-score = -1.01, R) >droVir3.scaffold_12822 3093532 82 + 4096053 --------------AUCCCUCGGCGUCGCCCAAGUCG--CGCGGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUGUUAGCGUGUGGUGCGCUU-------------- --------------.......(((...)))......(--((((.((((((..((.(((((..((......))..))))).))..)))))).)))))..-------------- ( -26.30, z-score = 0.34, R) >droMoj3.scaffold_6540 494076 70 + 34148556 ------------------------AUUCCCUAG--CG--GACGGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUGUUAGCGUGUGGUACGCGU-------------- ------------------------........(--((--.((.((((((......(((((..((......))..)))))....)))))).)).)))..-------------- ( -20.70, z-score = -0.20, R) >droGri2.scaffold_15074 2812865 84 - 7742996 --------------UCUCCUUGAUUCUAUUCAUCCAAGUUGCGGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUGUUAGAGUGUGGUACAAGA-------------- --------------....((((((..(((((...((((((....(.(((.......)))).))))))....((((....)))))))))..)).)))).-------------- ( -13.70, z-score = 1.30, R) >consensus _________AUUUGUUGCUUU___UUUUUUUGUCGGGGAGAGCGCGCGCGUCAAAAGCGGAAAUUUGUUUAUAAUCGUUGUUGGCGUGUGGUAGGGCC______________ ............................................(((((((.((.(((((..((......))..))))).)).)))))))...................... (-12.04 = -12.10 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:15 2011