| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,293,994 – 17,294,095 |
| Length | 101 |
| Max. P | 0.978347 |
| Location | 17,293,994 – 17,294,095 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.44 |
| Shannon entropy | 0.50548 |
| G+C content | 0.42472 |
| Mean single sequence MFE | -29.02 |
| Consensus MFE | -14.69 |
| Energy contribution | -14.13 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978347 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17293994 101 - 27905053 -----CGUCUUUGAUUGGCGUCAAUUAA---GAGGGCCUCAAG-UCCGGCAAUUACCCAUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCGAAGCGAAGC -----((.((((((((((((.(......---(((...)))..(-(((((......))..........(((((((....))))))).)))))))))))).))))))).... ( -28.20, z-score = -0.92, R) >droSim1.chr3R 23342555 101 + 27517382 -----CGUCUUUGAUUGGCGUCAAUUAA---GAGGGCCUCAAG-UCCGGCAAUUAUCCAUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCAAAGCGAUGC -----((.((((((((((((........---..((((.....)-)))......((((((....)...(((((((....))))))).)))))))))))).))))))).... ( -28.70, z-score = -1.29, R) >droSec1.super_6 163892 101 + 4358794 -----CGUCUUUGAUUGGCGUCAAUUAA---GAGGGCCUCAAG-UCCGGCAAUUACCCAUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCGAAGCGAUGC -----((.((((((((((((.(......---(((...)))..(-(((((......))..........(((((((....))))))).)))))))))))).))))))).... ( -28.20, z-score = -0.81, R) >droYak2.chr3R 6129066 101 - 28832112 -----CGUCUUUGAUUGGCGUCAAUUAG---GAGGGCCUGAAG-UCCGGCAAUUACCUAUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCAAAGCGAUGC -----((.((((((((((((.(..((((---(....))))).(-(((((......))..........(((((((....))))))).)))))))))))).))))))).... ( -32.20, z-score = -2.08, R) >droEre2.scaffold_4770 13373580 101 + 17746568 -----CGUCUUUGAUUGGCGUCAAUUAA---GAGGGCCUGAAG-UCCGGCAAUUACCUAUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCGAAGCGAUGC -----((.((((((((((((.((.....---((..(((.(...-.).)))..)).(((.........(((((((....)))))))))).))))))))).))))))).... ( -28.90, z-score = -1.21, R) >droAna3.scaffold_13340 17636778 105 - 23697760 -----CUUCUUUGAUUGGCGUCAAUUAGUGCGAAGCCCGAAAGAUUCGGCAAUUAUAUGUGUUUAGAUCGACUGGUACCAGUUGAAGGAUGUGCUAAUCCGAAACGACUC -----((((.(((((((....)))))))...)))).((((.....))))..........(((((...(((((((....))))))).((((......)))).))))).... ( -25.20, z-score = -0.53, R) >dp4.chr2 10735243 100 - 30794189 -----UGUCUUUGAUUGGCAUUAAUUA----GAGAGCCACAGA-AUCGGCAAUUAUAUAUGUUUAGAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUCUGAAACGAUGC -----.((.((.(((((((((......----....(((.....-...))).................(((((((....))))))).....))))))))).)).))..... ( -26.20, z-score = -2.03, R) >droPer1.super_0 2079154 100 + 11822988 -----UGUCUUUGAUUGGCAUUAAUUA----GAGAGCCACAGA-AUCGGCAAUUAUAUAUGUUUAGAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUCUGAAACGAUGC -----.((.((.(((((((((......----....(((.....-...))).................(((((((....))))))).....))))))))).)).))..... ( -26.20, z-score = -2.03, R) >droWil1.scaffold_181089 8162641 103 - 12369635 AAUCCAUCUUUUGAUUGCCAUCAAUUA----GAUACAU-UCGC-AUUGGCAAUUAUCUAUGUUUAUAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUUAAAAA-GAUGU ....((((((((((((((((((...((----((((.((-(.((-....)))))))))))........(((((((....)))))))..)))).)).)))).))))-)))). ( -30.50, z-score = -4.16, R) >droVir3.scaffold_12822 3092011 100 + 4096053 -----UGUCGUUGUUUGGCAUUAAUUA----GUGUUGUGCCGC-AUUUCGGAUUGGCGGCAAUUAAAUUAACUGGUACCAGUUGAAGGAUCCGCUAAUUGAAGACGAUGC -----.((((((....(((((.(((..----..))))))))..-..((((.((((((((..(((...(((((((....)))))))..))))))))))))))))))))).. ( -32.90, z-score = -2.90, R) >droMoj3.scaffold_6540 492777 86 + 34148556 -----UGCCAUUGAUUGGCAUUAAUUA----GUG------------UUCGGAUU---GGCAAUUAUAUCAACUGGUACCAGUUGAAGGAUCUGCUAAUUGAAGACGAUGC -----(((((.....))))).......----((.------------((((.(((---(((((((...(((((((....)))))))..))).))))))))))).))..... ( -29.80, z-score = -4.19, R) >droGri2.scaffold_15074 2811754 90 - 7742996 -----UGUCAUUGAUUGGCAUUAAUUA----GUGU-------C-AUUUCGGAUU---GGCAAUUAUAUCAACUGGUACCAGUUGAAGGAUCUGCUAAUUGAAGAUGAUGC -----(((((.....))))).......----((((-------(-((((..((((---(((((((...(((((((....)))))))..))).))))))))..))))))))) ( -31.30, z-score = -4.38, R) >consensus _____CGUCUUUGAUUGGCAUCAAUUA____GAGGGCCUCAAG_UUCGGCAAUUAUCUAUGUUUAGAUCAACUGGUACCAGUUGAAGGAUGUGCUAAUCCAAAACGAUGC ............((((((((.............((..........))....................(((((((....)))))))......))))))))........... (-14.69 = -14.13 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:14 2011