| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,292,044 – 17,292,135 |
| Length | 91 |
| Max. P | 0.759127 |
| Location | 17,292,044 – 17,292,135 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 71.00 |
| Shannon entropy | 0.56456 |
| G+C content | 0.45420 |
| Mean single sequence MFE | -23.69 |
| Consensus MFE | -10.92 |
| Energy contribution | -10.54 |
| Covariance contribution | -0.38 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.759127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17292044 91 - 27905053 ---------UCAAUUCGCCGCAGCACAAGACAAUCAAUAU-ACC--UGGUAGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUCACUGACAAAGG------- ---------.......((....))................-.((--(.((.((((....((-((((((((.....)))))))-))).......)))).))..)))------- ( -21.30, z-score = -1.30, R) >droAna3.scaffold_13340 17634649 84 - 23697760 -----------------UUAAAAUUUACGGCAACAUAGAG-GCC--UGGUAGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUCACUGACAAAACG------ -----------------...........(((.........-)))--..((.((((....((-((((((((.....)))))))-))).......)))).))......------ ( -22.00, z-score = -1.69, R) >droEre2.scaffold_4770 13371477 91 + 17746568 ---------UCAAUUCGCCGCUGCACAAGACAAUCAAUAU-ACC--UGGUAGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUCACUGACAAAGG------- ---------.......((....))................-.((--(.((.((((....((-((((((((.....)))))))-))).......)))).))..)))------- ( -21.10, z-score = -1.03, R) >droYak2.chr3R 6127182 91 - 28832112 ---------UAAAUUCGCCGCUGCACAAGACAAUCAAUAU-ACC--UGGUAGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUCACUGACAAAGG------- ---------.......((....))................-.((--(.((.((((....((-((((((((.....)))))))-))).......)))).))..)))------- ( -21.10, z-score = -1.05, R) >droSec1.super_6 161962 91 + 4358794 ---------UCAAUUCGCCGCAGCACAAGACAAUCAAUAU-ACC--UGGUAGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUCACUGACAAAGG------- ---------.......((....))................-.((--(.((.((((....((-((((((((.....)))))))-))).......)))).))..)))------- ( -21.30, z-score = -1.30, R) >droSim1.chr3R 23340229 91 + 27517382 ---------UCAAUUCGCCGCAGCACAAGACAAUCAAUAU-ACC--UGGUAGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUCACUGACAAAGG------- ---------.......((....))................-.((--(.((.((((....((-((((((((.....)))))))-))).......)))).))..)))------- ( -21.30, z-score = -1.30, R) >droWil1.scaffold_181089 8160333 112 - 12369635 UCAAUUUGACCGAAAUACAAAACUCCAUCACCAAGUUCAUUAUAUUGGGUAGGUGUUAAGAUAGGUGUUAUCCUUUAGCGCCCUUCGUUUCAUAAAAGGACAGAAGAGAACC ....((((.((........((((.....((((..(..((......))..).))))....((..(((((((.....)))))))..)))))).......)).))))........ ( -21.56, z-score = -0.46, R) >droPer1.super_0 2077143 89 + 11822988 ---------UCAAUUUACCGCAGCAGCACACAAACAAUGU-GCC--UGG-AGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC--UCGCUUUAUAACUGCCAAACG------- ---------..........(((((((((((.......)))-).)--))(-(((((((((..-(((......)))))))))))--)).........))))......------- ( -27.30, z-score = -2.68, R) >dp4.chr2 10733245 89 - 30794189 ---------UCAAUUCACCGCAGCAGCACACAAACAAUAA-GCC--UGG-AGGUGUUAAGA-AGGUGUUAUCCUUUAGCGCC--UCGCUUUAUAACUGCCAAACG------- ---------..........((((((((.............-).)--))(-(((((((((..-(((......)))))))))))--)).........))))......------- ( -21.42, z-score = -1.33, R) >droVir3.scaffold_12822 3089455 84 + 4096053 --------------UGUGCGUGCCGCAACGCAAACAAUGU-GCCCGAGGUAGGCGUUAAGA-GGGUGUUAUCCUUUAGCGCC-UUCGCUUUGUGAGCGAAC----------- --------------..(((((......))))).......(-(((((((((((((((((.((-((((...)))))))))))))-)..)))))).).)))...----------- ( -30.80, z-score = -1.62, R) >droMoj3.scaffold_6540 490144 84 + 34148556 --------------UGUGUGUGCCGCAACGCAAACAAUGUAGACCCGGGUAGGCGUUAAGA-GGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUGA-GAAAC----------- --------------..(((((......)))))...(((((..((....))..)))))..((-((((((((.....)))))))-))).........-.....----------- ( -24.30, z-score = -0.68, R) >droGri2.scaffold_15074 2809749 83 - 7742996 ------------UGUGUUUGUGCCGCAACACAAACAAUGU-GCU--GGGUAGGCGUUAAGA-GGGUGUUAUCCUUUAGCGCC-UUCGCUUUAUG--CGAACC---------- ------------..((((((((......))))))))....-...--.(((((((((((.((-((((...)))))))))))))-)((((.....)--))))))---------- ( -30.80, z-score = -2.59, R) >consensus _________UCAAUUCGCCGCAGCACAACACAAACAAUAU_ACC__UGGUAGGUGUUAAGA_AGGUGUUAUCCUUUAGCGCC_UUCGCUUUAUCACUGACAAAGG_______ ...................................................((((((((...(((......))))))))))).............................. (-10.92 = -10.54 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:13 2011