| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,277,003 – 17,277,055 |
| Length | 52 |
| Max. P | 0.932394 |
| Location | 17,277,003 – 17,277,055 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | reverse |
| Mean pairwise identity | 92.31 |
| Shannon entropy | 0.10596 |
| G+C content | 0.33974 |
| Mean single sequence MFE | -9.63 |
| Consensus MFE | -9.07 |
| Energy contribution | -8.63 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.932394 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17277003 52 - 27905053 AUAGCACAACUGAGAGGUAUAUCAUUACAAGGAUAUUUGUAUUGUAGCAAUC ...((...(((....)))....((.((((((....)))))).))..)).... ( -9.10, z-score = -1.33, R) >droSim1.chr3R 23324455 52 + 27517382 AUAGCACAACCGAGAGGUAUAUUAUUACAAGAGUAUUUGUAUUGCAGCAAUC ...(((..(((....))).......((((((....)))))).)))....... ( -9.20, z-score = -2.01, R) >droSec1.super_6 146850 52 + 4358794 AUUGCACAACCGAGAGGUAUAUUAUUACAAGAGUAUUUGUAUUGCAGCAAUC (((((...(((....))).......((((((....)))))).....))))). ( -10.60, z-score = -2.21, R) >consensus AUAGCACAACCGAGAGGUAUAUUAUUACAAGAGUAUUUGUAUUGCAGCAAUC ...((...(((....)))....((.((((((....)))))).))..)).... ( -9.07 = -8.63 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:09 2011