| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,267,322 – 17,267,408 |
| Length | 86 |
| Max. P | 0.824547 |
| Location | 17,267,322 – 17,267,408 |
|---|---|
| Length | 86 |
| Sequences | 5 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 96.98 |
| Shannon entropy | 0.05326 |
| G+C content | 0.48837 |
| Mean single sequence MFE | -23.44 |
| Consensus MFE | -21.82 |
| Energy contribution | -22.06 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.824547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17267322 86 - 27905053 UGUAAUCAAGCCAGAACAAUCAUAGCCGGAAACGGAAGUGGAUAUGGAACCAGCCAGAACUUGGAUUCGGCUCUACAGCCAGGAUC ......((((.........((((..(((....)))..))))...(((......)))...))))(((((((((....)))).))))) ( -23.30, z-score = -1.60, R) >droEre2.scaffold_4770 13346287 86 + 17746568 UGUAAUCAAGCCAGAACAAUCAUAGCCGGAAACGGAAGUGGAAAUGGAACCAGCCAGAACUUGGAUUCGGCUCUACAGCCAGGAUC ......((((.........((((..(((....)))..))))...(((......)))...))))(((((((((....)))).))))) ( -23.30, z-score = -1.65, R) >droYak2.chr3R 6097732 86 - 28832112 UGUAAUCAAGCCAGAACAAUCAUAGCCGGAAACGGAAGUGGAAAUGGAACCAGCCAGAACUUGGAUUCGGCUCUACAGCCAGGAUC ......((((.........((((..(((....)))..))))...(((......)))...))))(((((((((....)))).))))) ( -23.30, z-score = -1.65, R) >droSec1.super_6 137154 86 + 4358794 UGUAAUCAAGCCAGAACAAUCAUAGCCGGAAACGGAAGUGGAAAUGGAACCAGCCAGAACUUGAAUCCGGCUCUACAGCCGGGAUC .....(((((.........((((..(((....)))..))))...(((......)))...))))).(((((((....)))))))... ( -27.80, z-score = -2.94, R) >droSim1.chr3R 23314487 86 + 27517382 UGUAAUCAAGCCAGAACAAUCAUAACCGGAAACGAAAGUGGAAAUGGAACCAGCCAGAACUUGGAUUCGGCUCUACAGCCGGGAUC .....(((((................((....))....(((...((....)).)))...))))).(((((((....)))))))... ( -19.50, z-score = -0.72, R) >consensus UGUAAUCAAGCCAGAACAAUCAUAGCCGGAAACGGAAGUGGAAAUGGAACCAGCCAGAACUUGGAUUCGGCUCUACAGCCAGGAUC ......((((.........((((..(((....)))..))))...(((......)))...))))(((((((((....)))).))))) (-21.82 = -22.06 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:08 2011