| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,198,093 – 17,198,185 |
| Length | 92 |
| Max. P | 0.835458 |
| Location | 17,198,093 – 17,198,185 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.83 |
| Shannon entropy | 0.40771 |
| G+C content | 0.34490 |
| Mean single sequence MFE | -21.81 |
| Consensus MFE | -14.64 |
| Energy contribution | -13.12 |
| Covariance contribution | -1.52 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.835458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17198093 92 - 27905053 CUACAGUCAAUCAGUUGGAAAGUCUUUAUAAAGAUAAG-AAAGCCAUAGCUGGUAUUAUUUUGGCUUAUU-UUUAAAACCUAAAACUUUCCAGC------------- .............((((((((((.((((((((((((..-..(((((...............)))))))))-)))).....))))))))))))))------------- ( -20.26, z-score = -2.05, R) >droEre2.scaffold_4770 13273220 103 + 17746568 UUAAUGUCAAUCAGUUGGAAGGUCUUUGUGAAAAUAAG-AAGGCUAUAGCUGGUAUUGUCAUGGCUUAUUCUUUAAAAAUAACAGGCAAUUGACAUUCCAGGUU--- ..(((((((((((((((...(((((((((....))..)-)))))).))))))))((((((.((...((((.......)))).))))))))))))))).......--- ( -24.10, z-score = -1.67, R) >droYak2.chr3R 6004103 107 - 28832112 CUAAAGUCAAUCAGUUGGAUGGUCUUUGUAAGGAUAAGAAAAGUUAUAGCUGGCAUCGUGUUGGCUUAUUCUUUAUAAAUAACGCGCAAUCGACAUUCUAGGUUACC .............(((((.((((.((((((((((.............(((..((.....))..)))...))))))))))....)).)).)))))............. ( -19.19, z-score = 0.37, R) >droSec1.super_6 66061 92 + 4358794 CUACAGUCAAUCAGUUGGAAAGUCUUUGUAAAGAUAAG-AAAGCCAUAGCUGGUAUUAUUUUGGCUUAUU-UUGAAAACCAAAUGCUUUCCAGC------------- .............((((((((((.((((......((((-(((((((...............)))))).))-))).....)))).))))))))))------------- ( -22.76, z-score = -2.12, R) >droSim1.chr3R 23240483 92 + 27517382 CUACAGUCAAUCAGUUGGAAAGUCUUUGUAAAGAUAAG-AAAGCCAUAGCUGGUAUUAUUUUGGCUUAUU-UUGAAAACCAAAUGCUUUCCAGC------------- .............((((((((((.((((......((((-(((((((...............)))))).))-))).....)))).))))))))))------------- ( -22.76, z-score = -2.12, R) >consensus CUACAGUCAAUCAGUUGGAAAGUCUUUGUAAAGAUAAG_AAAGCCAUAGCUGGUAUUAUUUUGGCUUAUU_UUUAAAACCAAAAGCUUUCCAGC_____________ .............(((((((((((((....))))).....((((((...............))))))...................))))))))............. (-14.64 = -13.12 + -1.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:03 2011