| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,184,978 – 17,185,075 |
| Length | 97 |
| Max. P | 0.707690 |
| Location | 17,184,978 – 17,185,075 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 81.22 |
| Shannon entropy | 0.33375 |
| G+C content | 0.39816 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -17.48 |
| Energy contribution | -18.76 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17184978 97 + 27905053 UUGCCUUUAACUGGCUACAAGUCGAUUGAUAGUCUAAUAUUCUAGUGUUUGGCUAGACAUCCCUUUUGUGGUCAAGAAGGGUUGAUUGGUAGCAAGG ..........((.(((((.((((((....(((((.(((((....))))).))))).....(((((((.......))))))))))))).))))).)). ( -27.80, z-score = -1.66, R) >droSim1.chr3R 23226922 97 - 27517382 UUGCCUUUAACUGGCUACAAGUCGAUUGAUAGUCUAAUAUUCUAGUAUUUGGCUAGAGAUUCCUUUUGUGGUCAAGAAGGGUUGAUUGGUAGCGAGG ..........((.(((((.((((((((..(((((.(((((....))))).)))))..))))((((((.......))))))...)))).))))).)). ( -28.50, z-score = -2.11, R) >droSec1.super_6 52943 97 - 4358794 UUGCCUUUAACUGGCUACAAGUCGAUUGAUAGUCUAAUAUUCUAGUAUUUGGCUAGACAUUUCUUUUGUGGUCAAGAAGGGUUGAUUGGUAGCGAGG ..........((.(((((.((((((((..(((((.(((((....))))).)))))....((((((........)))))))))))))).))))).)). ( -26.40, z-score = -1.81, R) >droYak2.chr3R 5990697 83 + 28832112 --------------UUACAAGUCGAUUUAUAGUCUACUAUUCUAGUAUUUCGCUACAGAUCCUUUUCGUGGACAAGGAGGGUUCCAUAGCAGCAAGG --------------.....(((.(((.....))).))).............((((..(((((((((.(....).)))))))))...))))....... ( -14.80, z-score = -0.05, R) >droEre2.scaffold_4770 13259772 96 - 17746568 -UUAUCUUAAUUGGUUACUAGUCGAUUUAUAGUCUACUAUUUUAGUAAUUGGCUACACAUCCUUUUUGUGGUCAAGAAGGGUUGAGUGGCAGCGAGG -....(((....(((((((((.......((((....)))).))))))))).(((((.(((((((((((....))))))))).)).)))))...))). ( -25.20, z-score = -2.06, R) >consensus UUGCCUUUAACUGGCUACAAGUCGAUUGAUAGUCUAAUAUUCUAGUAUUUGGCUAGACAUCCCUUUUGUGGUCAAGAAGGGUUGAUUGGUAGCGAGG ..........((.(((((.((((((....(((((.(((((....))))).))))).....(((((((.......))))))))))))).))))).)). (-17.48 = -18.76 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:03 2011