| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,175,214 – 17,175,277 |
| Length | 63 |
| Max. P | 0.729037 |
| Location | 17,175,214 – 17,175,277 |
|---|---|
| Length | 63 |
| Sequences | 8 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 74.01 |
| Shannon entropy | 0.50121 |
| G+C content | 0.47733 |
| Mean single sequence MFE | -14.17 |
| Consensus MFE | -9.90 |
| Energy contribution | -8.81 |
| Covariance contribution | -1.09 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.729037 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17175214 63 + 27905053 CACCUACGAAACGAGCCAAGGGAAAUUGUAUCUAUGGGCUGUGUAUCUGUUUCUACGCGGCAC ..((...((.((((.((...))...)))).))...))((((((((........)))))))).. ( -16.50, z-score = -1.17, R) >droEre2.scaffold_4770 13249451 57 - 17746568 CACCUACGAAACGAGCCAAGGGAAAUUGUAUCUAUGGGCUGUGUAUCU------ACGCGGCAC ..((...((.((((.((...))...)))).))...))(((((((....------))))))).. ( -15.40, z-score = -1.41, R) >droYak2.chr3R 5978972 56 + 28832112 CACCUACGAAACGAGCCA-GGGAAAUUGUAUCUAUGGGCUGUGUAUCU------ACGCGGCAC ..((...((.((((.(..-..)...)))).))...))(((((((....------))))))).. ( -15.10, z-score = -1.21, R) >droSec1.super_6 43034 63 - 4358794 CACCUACGAAACGAGCCAAGGGAAAUUGUAUCUAUGGGCUGUGUAUCUGUAUCUACGCGGCAC ..((...((.((((.((...))...)))).))...))((((((((........)))))))).. ( -16.50, z-score = -1.17, R) >droSim1.chr3R 23216544 63 - 27517382 CACCUACGAAACGAGCCAAGGGAAAUUGUAUCUAUGGGCUGUGUAUCUGUAUCUACGCGGCAC ..((...((.((((.((...))...)))).))...))((((((((........)))))))).. ( -16.50, z-score = -1.17, R) >droPer1.super_19 1402165 57 + 1869541 CGCGCACGA---GAGCUA-AGAAAAUAGUAUCUAUGGGAUGUGUGUAUCUA--CGCGUGUCGC .((((((((---((((((-......)))).)))...(((((....))))).--..)))).))) ( -13.80, z-score = -0.11, R) >dp4.chr2 5673454 57 + 30794189 CGCGCACGA---GAGCUA-AGAAAAUAGUAUCUAUGGGAUGUGUGUAUCUA--CGCGUGUCGC .((((((((---((((((-......)))).)))...(((((....))))).--..)))).))) ( -13.80, z-score = -0.11, R) >droWil1.scaffold_181130 16170408 57 + 16660200 ---CUCCAA--CGAGCUA-AGGAAAAAGUAUCUAUGAAAUUGAAAUAUGUAUCUGAGAGAUAC ---.(((..--.......-.)))....((((((..((.((........)).))....)))))) ( -5.80, z-score = -0.08, R) >consensus CACCUACGAAACGAGCCA_GGGAAAUUGUAUCUAUGGGCUGUGUAUCUGUA__UACGCGGCAC ...............(((.(((........))).)))((((((((........)))))))).. ( -9.90 = -8.81 + -1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:32:02 2011