| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,154,769 – 17,154,870 |
| Length | 101 |
| Max. P | 0.714716 |
| Location | 17,154,769 – 17,154,870 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 79.59 |
| Shannon entropy | 0.37148 |
| G+C content | 0.51707 |
| Mean single sequence MFE | -32.21 |
| Consensus MFE | -22.26 |
| Energy contribution | -23.62 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.714716 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17154769 101 - 27905053 GCAACAAAAACGCGGAGGGA-GGGGCGUGGUGAAGUGUGGGGUAAAAAGAAAAUCUCUCAACGCUUCUGGCCAAACACACACACCGUGUUGCCAAUUGUUGU (((((((.(((((((.(...-..(...(((((((((((.(((..............))).)))))))..))))..).....).))))))).....))))))) ( -30.34, z-score = -0.78, R) >droEre2.scaffold_4770 13228760 95 + 17746568 GCAACAGAAGCGGGUG-----UGGGAGUGUGGGGGUGUGGGGGGAAAAGAAAAUCUCUCAACGCUCCUGGCCAA--ACACACACCGUGUUGCCAAUUGUUGU (((((....(((((((-----((...(..(((((((((.((((((........)))))).)))))))))..)..--.))))).))))))))).......... ( -37.90, z-score = -2.49, R) >droYak2.chr3R 5958614 81 - 28832112 -------------------CCAACAUGAAAGGGGGAGUGGGGGAAAAAGAAAAUCUCUCAACGCUCCUGGCCAA--ACACACACCGUGUUGCCAAUUGUUGU -------------------.(((((.....(((((..(((((((.........)))))))...)))))(((..(--((((.....))))))))...))))). ( -26.60, z-score = -1.81, R) >droSec1.super_6 22312 102 + 4358794 GCAACAAAAACGAGAAGGGGCGGGGCGUGUUGGAGUGUGGGCGAAAAAGAAAAUCUCUCAACGCUCCUGGCCAAACACACACACCGUGUUGCCAAUUGUUGU (((((((...........(((.(((.(((((((((......(......).....))).)))))).))).))).(((((.......))))).....))))))) ( -33.10, z-score = -1.06, R) >droSim1.chr3R 23200892 102 + 27517382 GCAACAAAAACGAGAAGGGGCGGGGCGUGUUGGAGUGUGGGCGAAAAAGAAAAUCUCUCAACGCUCCUGGCCAAACACACACACCGUGUUGCCAAUUGUUGU (((((((...........(((.(((.(((((((((......(......).....))).)))))).))).))).(((((.......))))).....))))))) ( -33.10, z-score = -1.06, R) >consensus GCAACAAAAACGAGAAGGGGCGGGGCGUGUUGGAGUGUGGGGGAAAAAGAAAAUCUCUCAACGCUCCUGGCCAAACACACACACCGUGUUGCCAAUUGUUGU (((((((........................(((((((((((((.........)))))).)))))))((((.....((((.....)))).)))).))))))) (-22.26 = -23.62 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:58 2011