Locus 10865

Sequence ID	dm3.chr3R
Location	17,143,207 – 17,143,319
Length	112
Max. P	0.567914

overview

Window 1

Location	17,143,207 – 17,143,319
Length	112
Sequences	3
Columns	120
Reading direction	forward
Mean pairwise identity	86.87
Shannon entropy	0.18502
G+C content	0.44580
Mean single sequence MFE	-35.87
Consensus MFE	-30.71
Energy contribution	-29.50
Covariance contribution	-1.21
Combinations/Pair	1.23
Mean z-score	-1.34
Structure conservation index	0.86
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.15
SVM RNA-class probability	0.567914
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 17143207 112 + 27905053
AUAGGCCUAUGAUCAUUCCGACUGUCUAAUGGAGUCUGUGGCACUUGAUUCUCCACAUGGCGUUGAUUGUUUGGACGGUUCGAUAAGUCGUGGAGAUCUUUAGCGAUGUAUU--------
......(((((((...((.((((((((((.(.((((..((.((..((......))..)).))..)))).))))))))))).))...)))))))(.(((......))).)...-------- ( -28.40, z-score =   0.37, R)
>droSec1.super_6 10713 120 - 4358794
AUUGGCCCAUGAUCAUUCCGACUGUCCAAUGGAAUCUGUGGCAUUUGAUUCUCUGCAUGACGUUGAUUGUUUGGACGGUUCGAUAAGUCAUGGAGAUCUUUAUCGCUGUAGGCUAUUACA
...((((((((((...((.((((((((((.(.((((..((.(((..(.....)...))).))..)))).))))))))))).))...))))))).(((....))))))((((....)))). ( -33.00, z-score =  -0.52, R)
>droSim1.chr3R 23190934 118 - 27517382
AUUGGCCCAUGAUCAUUCCGGCUGUCCAAUGGAAUCUGUGGCAUUUGAUUCUCCACAUGCCGUUGAUUGUUUGGACGGUUCGAUAAGUCAUGGAGAUCUUUAUCGCUGUAGGCGAUAA--
......(((((((...((..(((((((((.(.((((..((((((.((......)).))))))..)))).))))))))))..))...)))))))......(((((((.....)))))))-- ( -46.20, z-score =  -3.87, R)
>consensus
AUUGGCCCAUGAUCAUUCCGACUGUCCAAUGGAAUCUGUGGCAUUUGAUUCUCCACAUGACGUUGAUUGUUUGGACGGUUCGAUAAGUCAUGGAGAUCUUUAUCGCUGUAGGC_AU_A__
......(((((((...((.((((((((((.(.((((..((.(((.((......)).))).))..)))).))))))))))).))...)))))))........................... (-30.71 = -29.50 +  -1.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:57 2011