| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,113,102 – 17,113,207 |
| Length | 105 |
| Max. P | 0.738275 |
| Location | 17,113,102 – 17,113,207 |
|---|---|
| Length | 105 |
| Sequences | 9 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 78.74 |
| Shannon entropy | 0.43244 |
| G+C content | 0.48876 |
| Mean single sequence MFE | -29.99 |
| Consensus MFE | -14.90 |
| Energy contribution | -15.14 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17113102 105 - 27905053 GAGCUGCCACAGAAGUCGCCGCAGGACGUGACGCCG-CGGCGAUAAUCAUAACAAUAACGCAUUUGCCAGAAGUGUUAUGUUAUGCCUUU-------UCCAUGGCCACUCCAC-- (((..((((..(((((((((((.((.((...)))))-)))))))...(((((((.((((((.(((....))))))))))))))))....)-------))..))))..)))...-- ( -39.30, z-score = -4.11, R) >droSec1.super_38 384634 105 + 400794 GAGCUGACACAGAAGUCGCCGCAGGACGUGACGCCG-CGGCGAUAAUCAUAACAAUAACGCAUUUGCCAGAAGUGUUAUGUUAUUCCUUU-------UCCAUGGCCACUCCAC-- (((.((.((..(((((((((((.((.((...)))))-)))))))....((((((.((((((.(((....))))))))))))))).....)-------))..))..)))))...-- ( -31.00, z-score = -2.15, R) >droYak2.chr3R 5913830 105 - 28832112 GAGCUGCCACAGAAGUCGCCGCAGGACGUGACGCCG-CGGCGAUAAUCAUAACAAUAACGCAUUUGCCAGAAGUGUUAUGUUAUGCUUAU-------UCCAUGGCCACUCCAC-- (((..((((..(((((((((((.((.((...)))))-)))))))...(((((((.((((((.(((....))))))))))))))))....)-------))..))))..)))...-- ( -39.40, z-score = -4.12, R) >droEre2.scaffold_4770 13199078 105 + 17746568 GAGCUGCCACAGAAGUCGCCGCAGGACGUGACGCCG-CGGCGAUAAUCAUAACAAUAACGCAUUUGCCAGAAGUGUUAUGUUAUGCCUUC-------UCCAUGGCCACUCCAC-- (((..((((.((((((((((((.((.((...)))))-))))))....(((((((.((((((.(((....)))))))))))))))).))))-------)...))))..)))...-- ( -39.90, z-score = -4.14, R) >droAna3.scaffold_13340 3773312 100 - 23697760 UAGCUGGCACAGAAGUCGCCGCAGGACGUGACGCCU-UGAUGAUAAUCAUAACAAUAACGCAUUUGUCUGAAGUGUUAUG-----CCUUU-------CCCAUGGCCACUCCAC-- ..((.(((((....)).))))).(((.(((..(((.-((..((....(((((((.....((....))......)))))))-----....)-------).)).)))))))))..-- ( -25.00, z-score = -0.64, R) >dp4.chr2 5613235 101 - 30794189 GUGUUGUUACAGCAGUCGCCGCAGGACGUGACGCUC-AAGUGAUAAUCAUAACAAUAACGCAUUUGUCUGAAGUGUUAUG-----CCUUU-------UCCAUGGCCAUUCCACG- ((((((((..(((.(((((........)))))))).-..(((.....)))...))))))))...........(((..(((-----((...-------.....)).)))..))).- ( -24.90, z-score = -0.54, R) >droPer1.super_19 1329860 101 - 1869541 GUGUUGUUACAGCAGUCGCCGCAGGACGUGACGCUC-AAGUGAUAAUCAUAACAAUAACGCAUUUGUCUGAAGUGUUAUG-----CCUUU-------UCCAUGGCCAUUCCACG- ((((((((..(((.(((((........)))))))).-..(((.....)))...))))))))...........(((..(((-----((...-------.....)).)))..))).- ( -24.90, z-score = -0.54, R) >droWil1.scaffold_181130 16092325 102 - 16660200 GAGUUGGAGCAGUAGCUGCCGGUGGACGUGACAUAA-AAGUGAUAAUCAUAACAAUAACGCAUUUGUCUCGAGUGUUAUG-----CCUUU-------UCCAUGGCCAUACCAAAU ...(((((((....)))((((.((((((((((((..-..(.(((((.................))))).)..))))))))-----.....-------))))))))....)))).. ( -23.83, z-score = -0.26, R) >droVir3.scaffold_12822 2870363 102 + 4096053 ------------AAUUUGGCGCCGGACGUGACGCGGUCGGCGAUAAACAUAACAAUAACGCAUUUUCUCUAAGUGUUAUUUGCCUCGCUCCCACACAUCCAUGAACAUUUCACG- ------------.....(((((((..((.....))..))))............((((((((...........)))))))).)))..............................- ( -21.70, z-score = -0.31, R) >consensus GAGCUGCCACAGAAGUCGCCGCAGGACGUGACGCCG_CGGCGAUAAUCAUAACAAUAACGCAUUUGCCAGAAGUGUUAUGU____CCUUU_______UCCAUGGCCACUCCAC__ ...........(.(((.((((..(((.....(((.....))).....(((((((.....((....))......))))))).................))).)))).))).).... (-14.90 = -15.14 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:55 2011