| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,094,655 – 17,094,757 |
| Length | 102 |
| Max. P | 0.959375 |
| Location | 17,094,655 – 17,094,757 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.08 |
| Shannon entropy | 0.49240 |
| G+C content | 0.36987 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -12.29 |
| Energy contribution | -11.99 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959375 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17094655 102 + 27905053 --------------UGUGUUUUG-CAGUUCGCUAUUGUAAUUAUUGCAGCGAAUUUAAAUGGGAAAUACGUUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACUG --------------.........-((((.(((((((((.......((..(((((((.....(((((((....)))))))..-)))))))...))((....))...))))))))))))) ( -29.50, z-score = -2.62, R) >droSim1.chr3R 23152833 102 - 27517382 --------------UGUGUUUUG-AAGUUCGCUAUUGUGAUUAUUGCAGCGAAUUUAAAUGGGAAAUACGUUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACUG --------------.........-.(((.(((((((((..(..((((..(((((((.....(((((((....)))))))..-)))))))...))....))..)..)))))))))))). ( -28.30, z-score = -2.29, R) >droSec1.super_38 366150 102 - 400794 --------------UGUGUUUUG-AAGUUCGCUAUUGUGAUUAUUGCAGCGAAUUUAAAUGGGAAAUACGUUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACUG --------------.........-.(((.(((((((((..(..((((..(((((((.....(((((((....)))))))..-)))))))...))....))..)..)))))))))))). ( -28.30, z-score = -2.29, R) >droYak2.chr3R 5885019 102 + 28832112 --------------UGUGUUUUG-CAGUUCGCUAUUGUGAUUAUUGCAGCGAAUUUAAAUGGGAAAUACGUUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACUG --------------.........-((((.(((((((((..(..((((..(((((((.....(((((((....)))))))..-)))))))...))....))..)..))))))))))))) ( -30.10, z-score = -2.61, R) >droEre2.scaffold_4770 13180779 102 - 17746568 --------------UGUGUUUUG-CAGCUCGCUAUUGUGAUUAUUGCAGCGAAUUUAAAUGGGAAAUACGUUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACUG --------------.........-(((.((((((((((..(..((((..(((((((.....(((((((....)))))))..-)))))))...))....))..)..))))))))))))) ( -30.10, z-score = -2.55, R) >droAna3.scaffold_13340 3755950 102 + 23697760 --------------UGUAUUUUAAUAACUCGCUAUUGUAUUUAUUGCAGCGAAUUUUAA-GGGAAAUGUGAUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACUG --------------..............((((((((((.((..((((..(((((((...-.(((((((....)))))))..-)))))))...))....))..)).))))))))))... ( -28.10, z-score = -3.33, R) >dp4.chr2 5595487 112 + 30794189 ---UAUUGCUAUUGUAUGUUUUG-UAACUGGCUAUUGUAUUUAUUGCAAUGAAUUUAUG-GGAAAUUGCGUUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACGG ---..((((((((((...(((((-(...(((((((((((.....))))))((((((...-((((((.......))))))..-))))))...)))))...))))))))))))))))... ( -34.10, z-score = -3.86, R) >droPer1.super_19 1312085 112 + 1869541 ---UAUUGCUAUUGUAUGUUUUG-UAACUGGCUAUUGUAUUUAUUGCAAUGAAUUUAUG-GGAAAUUGCGUUUAUUUCCAC-AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACGG ---..((((((((((...(((((-(...(((((((((((.....))))))((((((...-((((((.......))))))..-))))))...)))))...))))))))))))))))... ( -34.10, z-score = -3.86, R) >droWil1.scaffold_181130 16073636 93 + 16660200 ---------------------UAUUAUACGGUAUUUGUAUAUAUUGCAACGAGUUUAAA---GGAAAAUAUUAAUUUCCACAAAAAUUU-CAGUUUUAUAGGAGAACAAUGGCGACUG ---------------------...((((((.....))))))..((((............---(((((.......)))))..........-..(((((.....)))))....))))... ( -11.20, z-score = 0.23, R) >droVir3.scaffold_12822 2850320 113 - 4096053 ---CUCCAAAAUUGUUUAUUUUUCUAACUUCUAUUUGUAUUUAUUGCAACGAAUUUAAG--GGAAAUUCGAUAAUUUCCACAAAAUUCGACAGCCGAGAACGAGAACAAUGGCGACUG ---(.(((...((((((..(((((..........(((((.....)))))(((((((...--(((((((....)))))))...)))))))......)))))...))))))))).).... ( -22.80, z-score = -1.95, R) >droMoj3.scaffold_6540 284349 113 - 34148556 ---CUCCAAAAUUGUUUAUUUUUCUAACUUCUAUUUGUAUUUAUUGCAACGAAUUUAAA--GGAAAUUCGAUAAUUUCCAACAAAUUCGACAGCCGAGAACGAGAACAAUGGCGACUG ---(.(((...((((((..(((((..........(((((.....)))))(((((((...--(((((((....)))))))...)))))))......)))))...))))))))).).... ( -21.70, z-score = -1.92, R) >droGri2.scaffold_15074 2612282 114 + 7742996 UAUUUCCAAAAAGUUUUGUUUUUCUAUCUUAUAUU-GUAUUUAUUGCAAUGAUCUUGAG--GGAAAUUCGAUAAUUUCCAC-AAAUUCGACAGCCGAGAACGAGAACAAUGGCGACUG .....(((.....((((((((((((.((....(((-(((.....))))))((..(((..--(((((((....))))))).)-))..)))).))..))))))))))....)))...... ( -21.90, z-score = -0.76, R) >consensus ______________UGUGUUUUG_UAACUCGCUAUUGUAUUUAUUGCAACGAAUUUAAA_GGGAAAUACGUUUAUUUCCAC_AAAUUCGACGGCCGAGAACGAGAACAAUGGCGACUG ..................................(((((.....)))))(((((((.....(((((((....)))))))...)))))))...((((.............))))..... (-12.29 = -11.99 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:49 2011