| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,079,542 – 17,079,633 |
| Length | 91 |
| Max. P | 0.892798 |
| Location | 17,079,542 – 17,079,633 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.89 |
| Shannon entropy | 0.38390 |
| G+C content | 0.48536 |
| Mean single sequence MFE | -22.04 |
| Consensus MFE | -14.40 |
| Energy contribution | -14.40 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17079542 91 + 27905053 AAAACAAUAGCUAGUGCUAUCAGCGCUA--------UAUGACCCACCGACUGU--CUG-----------UCCGCCCAUCGGUCUGUGC---A----GAAUGUGUGCUGUAUGAAUUCCC ......(((((....)))))((((((.(--------(((....(((.(((((.--.((-----------......)).))))).))).---.----..))))))))))........... ( -23.50, z-score = -1.84, R) >droSim1.chr3R 23137962 91 - 27517382 AAAACAAUAGCUAGUGCUAUCUGCGCUA--------UAUGACCCACCGACUGA--CUG-----------UCCGCCCAUCGGUCUGUGC---A----GAAUGUGUGCUGUAUGAAUUCCC ....(((((((.(((((.....)))))(--------(((....(((.((((((--.((-----------......)))))))).))).---.----..))))..))))).))....... ( -22.90, z-score = -1.98, R) >droSec1.super_38 351278 91 - 400794 AAAACAAUAGCUAGUGCUAUCUGCGCUA--------UAUGACCCACCGACUGA--CUG-----------UCCGCCCAUCGGUCUGUGC---A----GAAUGUGUGCUGUAUGAAUUCCC ....(((((((.(((((.....)))))(--------(((....(((.((((((--.((-----------......)))))))).))).---.----..))))..))))).))....... ( -22.90, z-score = -1.98, R) >droYak2.chr3R 5870830 93 + 28832112 AAAACAAUAGCUAGUGCUAUCUGCGCUA--------UAUGACCCACCGACUGAGCCUG-----------UCCGCCCAUCGGUCUGUGC---A----GAAUGUGUGCUGUAUGAAUUCCC ....(((((((..(..(..(((((((..--------........(((((.((.((...-----------...)).)))))))..))))---)----))..)..)))))).))....... ( -23.20, z-score = -1.67, R) >droEre2.scaffold_4770 13165974 91 - 17746568 UAAACAAUAGCUAGUGCUAUCUGCGCUA--------UAUGACCCGCCGACUGA--CUG-----------UCCGCCCAUCGGUCUGUGC---A----GAAUGUGUGCUGUAUGAAUUCCC ....(((((((..(..(..(((((((..--------...((((.((.(((...--..)-----------)).)).....)))).))))---)----))..)..)))))).))....... ( -25.90, z-score = -2.66, R) >dp4.chr2 5582758 97 + 30794189 AAAACAAUAGCCAGUGCUAUCUGUGCUA--------UAUGGCCCUCCGACUGUCCCUG-----------UCCACCAGGCAGUCUGUCC---GUUCUGUUUGUGUGCUGUUUGAAUUCCC .(((((((((((((......))).))))--------)((((....(.(((((..((((-----------.....))))))))).).))---))..)))))................... ( -22.40, z-score = -1.61, R) >droPer1.super_19 1299336 97 + 1869541 AAAACAAUAGCCAGUGCUAUCUGUGCUA--------UAUGGCCCUCCGACUGUCCCUG-----------UCCACCAGGCAGUCUGUCC---GUUCUGUUUGUGUGCUGUUUGAAUUCCC .(((((((((((((......))).))))--------)((((....(.(((((..((((-----------.....))))))))).).))---))..)))))................... ( -22.40, z-score = -1.61, R) >droWil1.scaffold_181130 16057492 119 + 16660200 AAAACAAUAGCCAAUGCUAUCUGUAUCUGUAAUACUUAUGGUACACCCUCUCUCUCUCCCUUUUUCUCCUCCGUCCAUUUGACCGUGUUAAAAUGUGUAUGUACAUUGUAUAAAUUCCC ...((((((((....))))).))).....((((((....((....)).........................(((.....))).)))))).((((((....))))))............ ( -13.10, z-score = -1.34, R) >consensus AAAACAAUAGCUAGUGCUAUCUGCGCUA________UAUGACCCACCGACUGA__CUG___________UCCGCCCAUCGGUCUGUGC___A____GAAUGUGUGCUGUAUGAAUUCCC ......(((((.(((((.....)))))................(((.((((((........................)))))).))).................))))).......... (-14.40 = -14.40 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:44 2011