| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,077,940 – 17,078,051 |
| Length | 111 |
| Max. P | 0.630010 |
| Location | 17,077,940 – 17,078,051 |
|---|---|
| Length | 111 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.91 |
| Shannon entropy | 0.63726 |
| G+C content | 0.43720 |
| Mean single sequence MFE | -30.22 |
| Consensus MFE | -9.42 |
| Energy contribution | -9.62 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.67 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.630010 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17077940 111 - 27905053 -----UGCGGACAAU--AAAUUCCAGCUCUCAGCGGGAAUGACUCCGUUCCCGCGUCUUUACAGCCU--AAACCUAACGAUUAUGGCUGAUGAAAUAUGCCGAUCCUUAAUGGGUUGGGA -----.(((((....--....))).))..((((((((((((....))))))))).......(((((.--....(....).....))))).)))......(((((((.....))))))).. ( -39.30, z-score = -3.51, R) >droSim1.chr3R 23136318 111 + 27517382 -----UGCGGACAAU--AAAUUCCAGCUCUCAGCGGGAAUGACUCCGUUCCCGCGUCUUUACAGCAU--AAACCUAACGAUUAUGGCUGAUGAAAUAUGCCGAUCCUUAAUGGGUUGGGA -----.(((((....--....))).))..((((((((((((....))))))))).......((((((--((..(....).)))).)))).)))......(((((((.....))))))).. ( -36.40, z-score = -2.67, R) >droSec1.super_38 349636 111 + 400794 -----UGCGGACAAU--AAAUUCCAGCUCUCAGCGGGAAUGACUCCGUUCCCGCGUCGUUACAGCAU--AAACCUAACGAUUAUGGCUGAUGAAAUAUGCCGAUCCGUAAUGGGUUGGGA -----..........--......(((((....(((((((((....)))))))))(((((((......--.....)))))))...)))))..........(((((((.....))))))).. ( -35.90, z-score = -1.83, R) >droYak2.chr3R 5869203 116 - 28832112 GAAAGUAUGAGGACU--GAGUUCCAGCUCUCAGCGGGAAUGACUCCGUUCCCGCGCCUUUACAGCCU--AAACUUAACGAUUAUGGCUGAUGAAAUACGCCGAUCCUUAAUGGGUUGGGA ....(((((((..((--(.....)))..))).(((((((((....)))))))))...((((((((((--((.(.....).))).))))).)))))))).(((((((.....))))))).. ( -44.30, z-score = -4.14, R) >droEre2.scaffold_4770 13164299 111 + 17746568 -----UGGGGACAAU--GAGUUCCAGCUCUCAGCGGGAAUGUCUCCGUUCCCGCGCCUUUACAGCCA--AAACUUAACGAUUAUUGCUGAUGAAAGAUGACGGUUCCUAAUGGGUUGGGA -----..(((((...--..))))).(((.((((((((((((....)))))))))..((((.((((..--................))))...)))).))).)))((((((....)))))) ( -33.67, z-score = -0.61, R) >droAna3.scaffold_13340 3739979 86 - 23697760 -----------------------CAAGGAU-AAUAAAAGUGAGUCCUCUUCUUUUUUUGCAUACCCCGAAAACAUAAUGGUAUUGGUUGAUGAAACAUGUUAGCCAAAAA---------- -----------------------..(((((-...........)))))..............((((.............))))(((((((((.......)))))))))...---------- ( -12.72, z-score = 0.24, R) >dp4.chr2 5580943 112 - 30794189 -----UGAGGCCAAUAAAAGGAGCAACACUCAGCGGGAACGACAAAAAUUCAAC-UUUUUAUACCCU--AAUCAUUACGAAAAUGACAGAUGAAAUACGUUCAUCCAUAAUGAGUUGGGA -----((((.((.......)).......))))(((....)).).....((((((-((.((((.....--..(((((.....)))))..((((((.....)))))).)))).)))))))). ( -19.90, z-score = -0.76, R) >droPer1.super_19 1297536 112 - 1869541 -----UGAGGCAAAUAAAAGGAGCAACACUCAGCGGGAACGACAAAAAUUCAAC-UUUUUAUACCCU--AAUCAUUACGAAAAUGACAGAUGAAAAACGUUCAUCCAUAAUGAGUUGGGA -----........((((((((.((........))(....).............)-))))))).(((.--..((((((.(.........((((((.....))))))).))))))...))). ( -19.60, z-score = -0.96, R) >consensus _____UGCGGACAAU__AAGUUCCAGCUCUCAGCGGGAAUGACUCCGUUCCCGCGUCUUUACAGCCU__AAACAUAACGAUUAUGGCUGAUGAAAUAUGCCGAUCCAUAAUGGGUUGGGA ............................(((((((((((........)))))..........................(((..((((...........)))))))........)))))). ( -9.42 = -9.62 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:43 2011