| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,040,507 – 17,040,562 |
| Length | 55 |
| Max. P | 0.563882 |
| Location | 17,040,507 – 17,040,562 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 91.07 |
| Shannon entropy | 0.12669 |
| G+C content | 0.37716 |
| Mean single sequence MFE | -10.53 |
| Consensus MFE | -9.19 |
| Energy contribution | -8.97 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.563882 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17040507 55 - 27905053 -GGUGUCUUCUUUAAUGCGUUGAAGUGCGCAUUUAUUGGUAUUUCAUCCAUUGUAA -...........(((((.(.((((((((.((.....)))))))))).))))))... ( -11.90, z-score = -1.93, R) >droSim1.chr3R 23095524 56 + 27517382 GAGUGUCUCCUUUACUGCCUUGAAGUGCGCAUUUAUUGGUAUUUCAUCCAUUAUAA .((((.......))))....((((((((.((.....)))))))))).......... ( -9.40, z-score = -1.14, R) >droSec1.super_38 308262 56 + 400794 GUGUGUCUCCUUUACUGCCUUGAAGUGCGCAUUUAUUGGCAUUUCAUCCAUUAUAA ....................((((((((.((.....)))))))))).......... ( -10.30, z-score = -1.34, R) >consensus GAGUGUCUCCUUUACUGCCUUGAAGUGCGCAUUUAUUGGUAUUUCAUCCAUUAUAA ....................((((((((.((.....)))))))))).......... ( -9.19 = -8.97 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:39 2011