| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,145,399 – 8,145,495 |
| Length | 96 |
| Max. P | 0.853109 |
| Location | 8,145,399 – 8,145,495 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 74.08 |
| Shannon entropy | 0.49403 |
| G+C content | 0.42630 |
| Mean single sequence MFE | -24.22 |
| Consensus MFE | -13.74 |
| Energy contribution | -15.97 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.92 |
| SVM RNA-class probability | 0.853109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8145399 96 + 23011544 UGAUAUGGGACUCGCAUAUUUUCAAAAGGUAUUUUCGGGGUUUUUUCCCCCGAGCACAUGAGUAAACCCUUCGUAGUAGCGGUAUGCUAAUUGUGU .((((((.(...).))))))..............((((((.......))))))(((((..((((.(((((.......)).))).))))...))))) ( -25.70, z-score = -1.18, R) >droSim1.chr2L 7926401 95 + 22036055 UGAUAUGGGACUCGCAUAUUUUCGAA-GGUAUUUUCGGGGUUUUUUCCCCCGAGCACAUGAGUAAACCCUUCGUAGUAGGGGUAUGCUAAUUGUGU .((((((.(...).))))))......-.......((((((.......))))))(((((..((((.((((((......)))))).))))...))))) ( -29.80, z-score = -1.89, R) >droSec1.super_3 3642397 95 + 7220098 UGAUAUGGGACUCGCAUAUUUUCGAA-GGUAUUUUCGGGUUUUUUUCCCCCGAGCACAUGAGUAAACCCUUCGUAGUAGGGGUAUGCUAAUUGUGU .((((((.(...).))))))......-.......(((((.........)))))(((((..((((.((((((......)))))).))))...))))) ( -26.00, z-score = -1.05, R) >droYak2.chr2L 10776655 85 + 22324452 ----------UACGCAUAUUUUCGAA-GGUAUUUUUCGGGGUUUUUUCCCCGAGCACAUGAGUAAACCCUUCGUAGUAGGGGUAUGCUAAUUGUGC ----------................-........((((((......))))))(((((..((((.((((((......)))))).))))...))))) ( -29.40, z-score = -3.59, R) >droEre2.scaffold_4929 17051185 81 + 26641161 --------------CAUAUUUUCGAA-GGUAUUUUUCGGGGUUUUUUCAACGAACACAUGAGUAAGCCCUUCGUAGUAGGGGUAUGCUAAUUGUGU --------------.....(..((((-(.....)))))..)............(((((..((((.((((((......)))))).))))...))))) ( -21.30, z-score = -2.38, R) >droAna3.scaffold_12916 9489435 75 + 16180835 UGACGGGUGUGACAUAUGUGUUGAGA-GGUAUUUUCGGGGUUUUUU---CCAAGUACCCAAG-----------------GGCUAUGCUAAUUAUGU ..(((....((.((((.((.((..(.-(((((((..((((....))---)))))))))).))-----------------.)))))).))....))) ( -13.10, z-score = 1.33, R) >consensus UGAUAUGGGACUCGCAUAUUUUCGAA_GGUAUUUUCGGGGUUUUUUCCCCCGAGCACAUGAGUAAACCCUUCGUAGUAGGGGUAUGCUAAUUGUGU ..................................((((((.......))))))(((((..((((.((((((......)))))).))))...))))) (-13.74 = -15.97 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:18 2011