| Sequence ID | dm3.chr3R |
|---|---|
| Location | 17,031,183 – 17,031,283 |
| Length | 100 |
| Max. P | 0.846982 |
| Location | 17,031,183 – 17,031,283 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.92 |
| Shannon entropy | 0.35031 |
| G+C content | 0.56027 |
| Mean single sequence MFE | -38.13 |
| Consensus MFE | -27.20 |
| Energy contribution | -27.93 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.846982 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 17031183 100 - 27905053 ---------GCUAAUGUGGCCA---AUGUGACUUGGGCUUUCGCUAUGACUGUGGCUUUGGCUGUCAUCGCGCCUGCUUACGUGAUGCGAGUGGCGUUGGCCGUCGAUGAGA ---------.((..((((((((---((((.(((((((((...(((((....)))))...))))..(((((((........)))))))))))).)))))))))).))...)). ( -42.00, z-score = -3.04, R) >droSim1.chr3R 23086421 100 + 27517382 ---------GCUAAUGUGGCCA---AUGUGACUUGGGCUUUCGCUAUGACUGUGGCUUUGGCUGUCAUCACGCCUGCUUACGUGAUGCGAGUGGCGUUGGCCGUCGACGAGA ---------.((..((((((((---((((.(((((((((...(((((....)))))...))))..(((((((........)))))))))))).)))))))))).))...)). ( -42.40, z-score = -3.19, R) >droSec1.super_38 299173 103 + 400794 ---------GCUAAUUUGGCCACACUUGUGACUUGGGCUUUCGCUAUGACUGUGGCUUUGGCUGUCACCACGCCUGCUUACGUGAUGCGAGUGGCGUUGGCCGUCGACGAGA ---------........(((((.....(((((...((((...(((((....)))))...))))))))).(((((.(((..(.....)..))))))))))))).......... ( -33.80, z-score = -0.37, R) >droYak2.chr3R 5815986 109 - 28832112 GCUAAUGUGGCUAAUAUGGCCA---AUGUGACUUGGGCUUUCGCUAUGACUGUGGCUUUGGUUGUCAUCGCGCCUGCUUACGUGAUGCGAGUGACGUUGGCCGUCGACGAGA (((.....)))....(((((((---((((.(((((((((...(((((....)))))...))))..(((((((........)))))))))))).)))))))))))........ ( -41.10, z-score = -2.42, R) >droEre2.scaffold_4770 13116649 100 + 17746568 ---------GCUAAUGUGGCCA---AUGUGACUUGGGUUUUCGUUAUGACUGUGGCUUUGGCUGUCAUCGCGUCUGCUUACGUGAUGCGAGUGGCGUUGGCCGUCGACGAGA ---------.((..((((((((---((((.(((((((((...(((((....)))))...))))..((((((((......))))))))))))).)))))))))).))...)). ( -38.30, z-score = -2.22, R) >droAna3.scaffold_12911 2282151 94 - 5364042 ------------------GCUGGGGUUGGUUAUAGUGCCAUUGCUGGUGGCUUGGAUGCUGCUGUCAUCGCGCCUGCUUACGUGCUGGGACUGGCGUUGGCCGUCGACGAGA ------------------((..(.((..(((.(((..(....((.((((.(...(((((....).))))))))).))....)..))).)))..)).)..))((....))... ( -31.20, z-score = 1.14, R) >consensus _________GCUAAUGUGGCCA___AUGUGACUUGGGCUUUCGCUAUGACUGUGGCUUUGGCUGUCAUCGCGCCUGCUUACGUGAUGCGAGUGGCGUUGGCCGUCGACGAGA .................(((((...((((.(((((((((...(((((....)))))...))))..(((((((........)))))))))))).))))))))).......... (-27.20 = -27.93 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:35 2011