Locus 10846

Sequence ID	dm3.chr3R
Location	16,958,091 – 16,958,182
Length	91
Max. P	0.722840

overview

Window 1

Location	16,958,091 – 16,958,182
Length	91
Sequences	4
Columns	91
Reading direction	reverse
Mean pairwise identity	89.19
Shannon entropy	0.17157
G+C content	0.52473
Mean single sequence MFE	-28.99
Consensus MFE	-23.52
Energy contribution	-23.46
Covariance contribution	-0.06
Combinations/Pair	1.15
Mean z-score	-1.83
Structure conservation index	0.81
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	0.51
SVM RNA-class probability	0.722840
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 16958091 91 - 27905053
UGUUGGCCGCUGCUGUCUUGCGAGCCCGAGCUCUUUUCUUUUGAUCCACCUUACAUCGACGUCGAAAUUCUCGAGUUUGGGCUUCGCUCCA
....(((....))).....((((((((((((((.....(((((((...............))))))).....)))))))))).)))).... ( -27.36, z-score =  -1.68, R)
>droSim1.chr3R 23018542 91 + 27517382
CAUUGGCAGCUGCUACUUUGCGAGCCCGGGCUCUUUUCUUUUGAUCCGCCUUACAUUUGCGUCGGAAUUCUCGAGUUUGGGUUUCGCUCCA
...(((.(((.((......))((((((((((((.....((((((..(((.........))))))))).....)))))))))))).)))))) ( -28.30, z-score =  -1.58, R)
>droSec1.super_38 235117 91 + 400794
CAUUGGCAGCUGCUACUUUGCGAGCCCGGGCUCUUUUCUUUUGAUCCGCCUUACAUCGGCGUCGGAAUUCUCGAGUUUGGGUUUCGCUCCA
...(((.(((.((......))((((((((((((.....((((((..((((.......)))))))))).....)))))))))))).)))))) ( -32.70, z-score =  -2.46, R)
>droEre2.scaffold_4770 13052103 91 + 17746568
CGUUGGCAGCUGCUUUCUUGCGAGCCCGGGCUCUUUUCUUUUGACCCACUUUACAUCGACGGCGAAAUUCUCGAGUUUGAGUUUCGCUCCA
((((((..(((((......)).)))..(((.((.........)))))........))))))(((((((((........))))))))).... ( -27.60, z-score =  -1.58, R)
>consensus
CAUUGGCAGCUGCUACCUUGCGAGCCCGGGCUCUUUUCUUUUGAUCCACCUUACAUCGACGUCGAAAUUCUCGAGUUUGGGUUUCGCUCCA
...(((.(((.((......))((((((((((((.....(((((((...............))))))).....)))))))))))).)))))) (-23.52 = -23.46 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:32 2011