| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,935,547 – 16,935,605 |
| Length | 58 |
| Max. P | 0.981834 |
| Location | 16,935,547 – 16,935,605 |
|---|---|
| Length | 58 |
| Sequences | 9 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 64.60 |
| Shannon entropy | 0.68075 |
| G+C content | 0.43218 |
| Mean single sequence MFE | -16.24 |
| Consensus MFE | -7.65 |
| Energy contribution | -7.00 |
| Covariance contribution | -0.65 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.09 |
| SVM RNA-class probability | 0.981834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16935547 58 + 27905053 ------------UGGUUUGAUA-GACACU-AUUAUCAUGCCGGGUUCUCGGACACGUUUGUUUGAUUGCCUU ------------.(((.(((((-(.....-.)))))).)))((((..(((((((....)))))))..)))). ( -18.40, z-score = -3.06, R) >droSim1.chr3R 22995198 58 - 27517382 ------------UGGUUUGAUA-GACACU-AUUAUCAUGCCGGGUUCUCGGACACGUUUGUUUGAUUGCCUU ------------.(((.(((((-(.....-.)))))).)))((((..(((((((....)))))))..)))). ( -18.40, z-score = -3.06, R) >droSec1.super_38 212075 58 - 400794 ------------UGGUUUGAUA-GACACU-UUUAUCAUGCCGGGUUCUCGGACACGUUUGUUUGAUUGCCUU ------------.(((.(((((-((....-))))))).)))((((..(((((((....)))))))..)))). ( -19.90, z-score = -3.81, R) >droYak2.chr3R 5720582 58 + 28832112 ------------UGGUUUGAUA-GACAUU-AUUAUCAUGCUGGGUUCUCGGACACGUUUGUUUGAUUGCCUU ------------.(((.(((((-(.....-.)))))).)))((((..(((((((....)))))))..)))). ( -15.80, z-score = -2.45, R) >droEre2.scaffold_4770 13027930 58 - 17746568 ------------UGGUUUGAUA-GACAUU-AUUAUCAUGCCGGGUUCUCGGACACGUUUGUUUGAUUACCUU ------------.(((.(((((-(.....-.)))))).)))((((..(((((((....)))))))..)))). ( -18.10, z-score = -3.33, R) >droAna3.scaffold_13340 7862777 55 - 23697760 -----------------UGGUUUAAUGAACAUUAUCUGGCCGGCUGGACAGGCACGUUUGUUUGAUUGUCUU -----------------.((((..((((...))))..))))(((....((((((....))))))...))).. ( -9.60, z-score = 0.48, R) >droPer1.super_3 5216820 72 - 7375914 UGGUCACCGGCCAAGCGUGACGCUUCGCUCGUUAUCAGGCCGGGCACUUCAGCACGUUUGUUUGAUUGUCUU .(((((((((((....((((((.......))))))..))))))((......)).........)))))..... ( -20.30, z-score = 0.00, R) >dp4.chr2 11383011 72 - 30794189 UGGUUACCGGCCAAGCGUGACGCUACGCUCGUUAUCAGGCCGGGCACUUCAGCACGUUUGUUUGAUUGUCUU ......((((((.((((((....)))))).(....).))))))(((.((.((((....)))).)).)))... ( -20.90, z-score = -0.24, R) >droVir3.scaffold_13047 17406989 63 - 19223366 -------UUAUUUGAUUUGCCUUAUCAAUCGUU--CGUUUCGUCUAAUUGGAAAUAUUUGUAUGAUUAAACA -------......(((.......)))((((((.--((.....(((....)))......)).))))))..... ( -4.80, z-score = 0.97, R) >consensus ____________UGGUUUGAUA_GACACU_AUUAUCAUGCCGGGUUCUCGGACACGUUUGUUUGAUUGCCUU .........................................((((..(((((((....)))))))..)))). ( -7.65 = -7.00 + -0.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:30 2011