| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,929,926 – 16,930,018 |
| Length | 92 |
| Max. P | 0.730643 |
| Location | 16,929,926 – 16,930,018 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 78.62 |
| Shannon entropy | 0.41351 |
| G+C content | 0.31954 |
| Mean single sequence MFE | -16.53 |
| Consensus MFE | -11.31 |
| Energy contribution | -11.53 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16929926 92 + 27905053 AGAUAGACGCCACAUCAAGAUUACCUUACAAUAAAAGUGAUCAAAUAUAGAUAGAGAUAUGUUAAUGCUCUUGUGAUAAGAUAAAUUGGAAG .........(((.(((..((((((.((......)).))))))...(((....((((.(((....)))))))....))).)))....)))... ( -11.90, z-score = -0.09, R) >droSim1.chr3R 22989540 92 - 27517382 AGAUAAACGUCACAUCAAGAUUACCUUGCAAUGAAGGUGAUCAAAUAUAGAUAGAGAUAUGUUAAUGCUCUUGUGAUAAGAUAAAUUGGAAG ........((((((....(((((((((......)))))))))..........((((.(((....)))))))))))))............... ( -20.90, z-score = -2.54, R) >droSec1.super_38 206446 92 - 400794 AGAUAAACGUCACAUCAAGAUUACCUUGCAAUGAAGGUGAUCAAAUAUAGAUAGAGAUAUGUUAAUGCUCUUGUGAUAAGAUAAAUUGGAAG ........((((((....(((((((((......)))))))))..........((((.(((....)))))))))))))............... ( -20.90, z-score = -2.54, R) >droYak2.chr3R 5714937 92 + 28832112 AGAAAAACGCCACAUGAAGAUUACUUUGCAAUGGAGGUGAUCAAAUAUAGAUGGAGAUAUGUUAAUGCUCUUGUGAUUAGAUAACUGGGGAG .......(.(((......(((((((((......)))))))))..........((((.(((....)))))))..............))).).. ( -16.00, z-score = -0.46, R) >droEre2.scaffold_4770 13022162 92 - 17746568 UGUAGAACGCCACAUCAAGAUUACUUUGCAAUGAAGGUGAUCAAAUAUAGAUGGAGAUAUGUUAAUGCACUUGUGAUAAGAUAAGUGGGAAA .........((.......(((((((((......))))))))).((((((........))))))....(((((((......)))))))))... ( -18.30, z-score = -1.33, R) >droAna3.scaffold_13340 7857614 83 - 23697760 ------AUGUCUCUUCAAGAU-AUCUUCAAUAAAAGAAGAUAAAAGAUGGAUAUAAACGAGGUUAAAUA--UAAGAUAAGAUAAAUGGAACG ------.(((((..((....(-((((((.......))))))).....((........))..........--...))..)))))......... ( -11.20, z-score = -0.81, R) >consensus AGAUAAACGCCACAUCAAGAUUACCUUGCAAUGAAGGUGAUCAAAUAUAGAUAGAGAUAUGUUAAUGCUCUUGUGAUAAGAUAAAUGGGAAG ..........((((....(((((((((......))))))))).((((((........))))))........))))................. (-11.31 = -11.53 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:29 2011