| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,144,401 – 8,144,521 |
| Length | 120 |
| Max. P | 0.794474 |
| Location | 8,144,401 – 8,144,521 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.06 |
| Shannon entropy | 0.33568 |
| G+C content | 0.34049 |
| Mean single sequence MFE | -25.65 |
| Consensus MFE | -18.75 |
| Energy contribution | -18.00 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8144401 120 + 23011544 GUCAAUUUAUUCUCUUGGAUUUAUUUUAGACAGCAUUAUAAAAUGGGUUUUUCGUCAAUUGGGCAGAGUACACUUUGCCGAAGGAAACCGUGUUAAAUACUUCAAUAUCGGAAUAGAGAA .....((((((((....((..(((((.(.((..((((....))))(((((((......((.(((((((....))))))).))))))))))).).)))))..))......))))))))... ( -27.50, z-score = -1.81, R) >droYak2.chr2L 10775681 119 + 22324452 GUCUAUUUAUUCUCUCGAUAUUCUUUUACAAAGCUUUUAUAAAUGUGGUUUCA-UUAAUUGGGGAGAGUACACUUUUUUAAAGGAAACCGUGUUAAAUACGUCAGCGUGGGAAUAGAGAA .....(((((((((...........................((..(((((((.-....((..((((((....))))))..)).)))))))..))....(((....))))))))))))... ( -24.40, z-score = -0.90, R) >droSec1.super_3 3641425 106 + 7220098 GUCAAUUUAUUCUCUUGGAUUUCUUUUA-------------AAUGGGAUUUCU-UCAAUUGGGUAGAGUACACUUUGCCAAAGGAAAUCGUGUUAAAUACUUCAGCAUCGGAAUAGAGAA .....((((((((..((((((((((((.-------------.....((.....-)).....(((((((....)))))))))))))))))((((...)))).....))..))))))))... ( -25.70, z-score = -1.99, R) >droSim1.chr2L 7925411 119 + 22036055 GUCAAUUUAUUCUCUCGGAUUUAUAUUACACAACUUUCAAGAAUGGGUUUUCU-UCAAUUGGGCAGAGUACACUUUGCCAACGGAAAUCGUGUUAAAUACUUUAGCAUCGGAAUAGAGAA .....((((((((....(((((........(((..((.(((((......))))-).)))))(((((((....))))))).....)))))(((((((.....))))))).))))))))... ( -25.00, z-score = -1.68, R) >consensus GUCAAUUUAUUCUCUCGGAUUUAUUUUACACAGCUUU_AAAAAUGGGUUUUCU_UCAAUUGGGCAGAGUACACUUUGCCAAAGGAAACCGUGUUAAAUACUUCAGCAUCGGAAUAGAGAA .....((((((((..((.............................(((((((........(((((((....)))))))...)))))))((((...)))).....))..))))))))... (-18.75 = -18.00 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:18 2011