| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,814,846 – 16,814,998 |
| Length | 152 |
| Max. P | 0.518991 |
| Location | 16,814,846 – 16,814,998 |
|---|---|
| Length | 152 |
| Sequences | 6 |
| Columns | 163 |
| Reading direction | reverse |
| Mean pairwise identity | 74.77 |
| Shannon entropy | 0.46896 |
| G+C content | 0.46751 |
| Mean single sequence MFE | -41.48 |
| Consensus MFE | -24.36 |
| Energy contribution | -25.57 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518991 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16814846 152 - 27905053 -GUUGAUGUCUCUGUGUCCCCCAGUUCAUAAUUAUUUCGU------GGGCACGGAUUUGCUUUUGUUCUCUGCUCGGCUUUUUUUCGCUUUCCCCCAUCCCACCUACAUGCGUUGGGAAAUCGGGCGAACUCAGACACGGAAAAUAUGGCAAAAAAAAA---- -.....((((((((((((....(((((.............------(((.(((((......))))).))).(((((..(((((..(((.....................)))..)))))..))))))))))..))))))))......))))........---- ( -38.00, z-score = -0.10, R) >droWil1.scaffold_181089 6142523 142 - 12369635 -------GACCGAGUCCCCCAAAGCUCAUAAUUAUUUU-------------CGUGUGCUCUACACUAUUUUGGUUGAGAUUGCCUCUGCGCCCAUCAU-CUGCUUGGUGGCCAGUUGAGAUUAGGCGAGGUGAAAAGCAUGUAAUAAAAGCUAACACCACUAA -------((((((((........))))...........-------------.(((((...)))))......))))....(((((((((.(((.((((.-.....))))))))))........))))))((((...(((...........)))..))))..... ( -33.70, z-score = 0.12, R) >droEre2.scaffold_4770 12904618 149 + 17746568 -GUUCAUGUCUCUGUGUCCCCCAGUUCAUAAUUAUUUGGU------GGGCACGGAUUUGCUUUUGUUCUCUGCUCGGC-UUUUUUCGCUUU-CCCCAU-CCACCUACAUGCGUUGGGAAAUCGGGCGAACUCAGACGCGGAAAAUAUCGCAAAAAACAG---- -.....(((.(((((((((.((((...........)))).------)))))))))(((((...((((.((((((((..-(((.((((.(((-(((.((-.((......)).)).)))))).)))).)))..).)).))))).))))..)))))..))).---- ( -44.20, z-score = -2.06, R) >droYak2.chr3R 5606927 155 - 28832112 GCUCAUUUUCUCUGUGUCCCCCGGUUCAUAAUUAUUUGGUGGGCACGGGCACGGACUUGCUUUUGUUCUCUGCUCGGC-UCUUUUCGCUUU-CCCCAU-CCACCUACAUGCGUUGGAAAAUCGGGCGAACUCAGACAC-GAAAAUGUGGCAAAAAACAG---- ((((((((((((((.((.((((((((..........(((((((..((((((.((((........))))..))))))((-.......))...-.)))).-)))((.((....)).))..))))))).).)).))))...-))))))).))).........---- ( -47.90, z-score = -2.25, R) >droSec1.super_38 89717 151 + 400794 -GUUGAUGUCUCUGUGUCCCCCAGUUCAUAAUUAUUUGGU------GGGCACGGAUUUGCUUUUGUUCUCUGCUCGGCUUUUUUUCGCUUACCCCCAU-CCACCUACAUGCGUUGGAAAAUCGGGCGAACUCAGACACGGAAAAUAUGGCAAAAAAAGA---- -.........(((((((((.((((...........)))).------)))))))))((((((..((((.((((((((..(((((..(((..........-..........)))..)))))..)))))(....)......))).)))).))))))......---- ( -41.25, z-score = -0.81, R) >droSim1.chr3R 22873347 151 + 27517382 -GUUGAUGUCUCUGUGUCCCCCAGUUCAUAAUUAUUUGGU------GGGCACGGAUUUGCUUUUGUUCUCCGCUCGGCUUUUUUUCGCUUUCCCCCAU-CCACCUACAUGCGUUGGGAAAUCGGGCGAACUCAGACACGGAAAAUAUGGCAAAAAAAAA---- -.........(((((((((.((((...........)))).------)))))))))((((((..((((.((((((((..(((((..(((..........-..........)))..)))))..)))))(....)......))).)))).))))))......---- ( -43.85, z-score = -1.39, R) >consensus _GUUGAUGUCUCUGUGUCCCCCAGUUCAUAAUUAUUUGGU______GGGCACGGAUUUGCUUUUGUUCUCUGCUCGGCUUUUUUUCGCUUUCCCCCAU_CCACCUACAUGCGUUGGGAAAUCGGGCGAACUCAGACACGGAAAAUAUGGCAAAAAAAAA____ ..........((((((((....(((((...................(((.(((((......))))).))).((((((..((((..(((.....................)))..))))..)))))))))))..))))))))...................... (-24.36 = -25.57 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:22 2011