| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,808,358 – 16,808,464 |
| Length | 106 |
| Max. P | 0.848262 |
| Location | 16,808,358 – 16,808,464 |
|---|---|
| Length | 106 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.60 |
| Shannon entropy | 0.31106 |
| G+C content | 0.48425 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -15.79 |
| Energy contribution | -15.72 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16808358 106 - 27905053 ACAUUAUCCCAUUCCCAUAAUCAUCAUCAUCACCGACGCCGUUAUCAUCGUAGUAAUCA-UGUGGCA-------AGCUUUCCGGCCGGAGCAACAGUUUCGGCCCACAAACAAA .....................................((((....(((.((....)).)-)))))).-------........(((((((((....))))))))).......... ( -19.10, z-score = -1.02, R) >droEre2.scaffold_4770 12898156 100 + 17746568 GCAUUAUCCCAUCGCCAUAAUCAUCAU------CGACGCCGUUAUCAUCGUAAUAAUCA-UGUGGCA-------AACUUCCCGAUCGAAGCAACAGUUUCGGCCCACAUACAAA ((...........((((((.((.....------.))....(((((....))))).....-)))))).-------...........((((((....))))))))........... ( -15.40, z-score = -0.54, R) >droYak2.chr3R 5600555 92 - 28832112 GCAUUAUCCCAUCGCCAUCAUCG--------------ACCGUUAUCAUCUUAAUAAUCG-UGUGGCA-------AACUUUCCGGCCGGAGCAACAGUUUCGGCCCACAAACAAA .............((((.((.((--------------(..((((......))))..)))-)))))).-------........(((((((((....))))))))).......... ( -26.60, z-score = -4.13, R) >droAna3.scaffold_13340 8065490 108 - 23697760 ACAUUAUCCCAACGCCAUCAUCGCCAU------CAGCGCCGUUAUCAUCGUAAUAAUCAUUGCGGCAGUGGCCUGGCUUCCCGGCCGGAGCAACAGUUUCGGCCCACAAACAAA .............((((.....(((((------....(((((...................))))).))))).)))).....(((((((((....))))))))).......... ( -32.31, z-score = -2.25, R) >consensus ACAUUAUCCCAUCGCCAUAAUCAUCAU______CGACGCCGUUAUCAUCGUAAUAAUCA_UGUGGCA_______AACUUCCCGGCCGGAGCAACAGUUUCGGCCCACAAACAAA .....................................((((.....................))))................(((((((((....))))))))).......... (-15.79 = -15.72 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:18 2011