| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,802,389 – 16,802,491 |
| Length | 102 |
| Max. P | 0.954827 |
| Location | 16,802,389 – 16,802,491 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 85.76 |
| Shannon entropy | 0.23956 |
| G+C content | 0.47535 |
| Mean single sequence MFE | -28.04 |
| Consensus MFE | -21.72 |
| Energy contribution | -23.22 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.954827 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16802389 102 - 27905053 GCCUUAUGGCCAUAUAAACGCAGCAAUGGAAACAG--CAGCAGCGAAAGCAGCAAAAGUAGCGAAAGAGAAGCAAACGCUGCACGCCAUUGCUGUAAGUACAGU (((....))).........((((((((((.....(--((((.((....)).((.....(..(....)..).))....)))))...))))))))))......... ( -36.70, z-score = -4.09, R) >droSim1.chr3R 22868831 104 + 27517382 GCCUUAUGGCCAUAUAGACGCAGCAAUGGAAACAGAACAGAACAGAAGCUAACAGAAGUAGCGAAAGAGAAGCAAACGCUGCACGCCAUUGCUGUAAGUACAGU (((....))).........((((((((((.........((........)).......((((((.............))))))...))))))))))......... ( -26.62, z-score = -2.26, R) >droSec1.super_38 77206 90 + 400794 GCCUUAUGGCCAUAUAGACGCAGCAAUGGAAACAG--------------CAGCAGAAGUAGCGAAAGAGAAGAACACGCUGCACGCCAUUGCUGUAAGUACAGU (((....))).........((((((((((.....(--------------((((.....(..(....)..).......)))))...))))))))))......... ( -29.40, z-score = -3.34, R) >droEre2.scaffold_4770 12891914 102 + 17746568 GCCUUAUUGCCAUCAAGACGCAGCAAUGGAAACAA--CACCAGCGAAAUCAGCAGAAGUAGCGAAAGAGAAGCAAACGCUGCACGCCAUUACUGUAAGUACAGU ...................((((.(((((......--.....((.......))....((((((.............))))))...))))).))))......... ( -19.42, z-score = 0.16, R) >consensus GCCUUAUGGCCAUAUAGACGCAGCAAUGGAAACAG__CAGCAGCGAAA_CAGCAGAAGUAGCGAAAGAGAAGCAAACGCUGCACGCCAUUGCUGUAAGUACAGU (((....))).........((((((((((.............((.......))....((((((.............))))))...))))))))))......... (-21.72 = -23.22 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:17 2011