| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,129,709 – 8,129,826 |
| Length | 117 |
| Max. P | 0.755641 |
| Location | 8,129,709 – 8,129,826 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.84 |
| Shannon entropy | 0.47551 |
| G+C content | 0.36068 |
| Mean single sequence MFE | -20.92 |
| Consensus MFE | -11.96 |
| Energy contribution | -12.12 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.755641 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8129709 117 + 23011544 --UAUCGAAAGAAAAAGAAGCAGACACAACUUUUAAUUCGAUUGGGUUUUACCUUGUCGAAUUGCGACUUAAGGUGUUCCUUCACCUCUGCAAAGCAGAUAAGAUAAGUUUCAAAAACU- --..((....))....(((((............(((((((((.(((.....))).)))))))))...((((.((((......))))(((((...)))))))))....))))).......- ( -32.40, z-score = -3.53, R) >droSim1.chr2L 7909177 109 + 22036055 ------UAUAGAAGGAAAAACAGACAACACAUA-AAUUCGAUUGGGUUUUACCUUGCCGAAUUGCGACUUAAGGUGUUCCUUCACCUCCGCAAAG---AUAAGAUAAAUUUCAAAAACU- ------........((((...............-((((((...(((.....)))...))))))(((.....(((((......))))).)))....---..........)))).......- ( -18.40, z-score = -0.57, R) >droSec1.super_3 3626057 110 + 7220098 ------UAUAGAAGGAAAAACAGACAAAACAUA-AAUUCGAUUGGGUUUUACCUUGCCGAAUUGCGACUUAAGGUGUUCCUUCACCUCCCCAAAG---AUAAGAUAAGUUUCAAAAACGU ------....(((((((..((............-((((((...(((.....)))...))))))..........)).)))))))............---...................... ( -17.45, z-score = 0.22, R) >droYak2.chr2L 10760608 92 + 22324452 ---------------------------UAAAUAAAAUUCAAUUGGGUUUUACCUUGAUGAAUUGCGACUUCAGGUGUUCCUUCACCUCCGCAAAGCAGAUAAGAUAAGAUUCGAAAACC- ---------------------------..............((((((((((.((((.((..(((((.....(((((......))))).)))))..))..)))).)))))))))).....- ( -22.50, z-score = -2.66, R) >droEre2.scaffold_4929 17035348 116 + 26641161 UAAAAAAGAAUUAAAAAACGCAAGUACAACA-AUAAUUCGAUUAGAGUUUACCUUGCCGAAUCGCGACAUAAAGUGUUCCUUCACCUCCGCUAAGCAGAUAAGAUA-GUUCCAAAAAC-- .......((((((......(((((...(((.-.((((...))))..)))...)))))...(((((........(((......))).........)).)))....))-)))).......-- ( -13.83, z-score = -0.40, R) >consensus ______UAAAGAAAAAAAAACAGACAAAACAUA_AAUUCGAUUGGGUUUUACCUUGCCGAAUUGCGACUUAAGGUGUUCCUUCACCUCCGCAAAGCAGAUAAGAUAAGUUUCAAAAACU_ ..................................((((((...(((.....)))...))))))(((.....(((((......))))).)))............................. (-11.96 = -12.12 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:25:17 2011