| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,756,580 – 16,756,694 |
| Length | 114 |
| Max. P | 0.917923 |
| Location | 16,756,580 – 16,756,694 |
|---|---|
| Length | 114 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.76 |
| Shannon entropy | 0.31800 |
| G+C content | 0.49029 |
| Mean single sequence MFE | -33.68 |
| Consensus MFE | -28.09 |
| Energy contribution | -27.73 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.917923 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16756580 114 - 27905053 UGUAACAAAUAUAUUGACAUUUUUCAGGUAUUUGGUACAACAGU------GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU ((((.(((((((.((((......))))))))))).))))...((------(......(((((.((((((.((((....))))...)))))))))))(((((.....)))))......))) ( -33.20, z-score = -1.45, R) >droSim1.chr3R 22814982 114 + 27517382 UGUAGCAAAUAUUUUGAUAUUUUCCAGGUAUUUGGUACAACAGU------GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU ((((.(((((((((.((.....)).))))))))).))))...((------(......(((((.((((((.((((....))))...)))))))))))(((((.....)))))......))) ( -36.60, z-score = -2.44, R) >droSec1.super_38 30279 114 + 400794 UGUAGCAAAUAUUUUGAUAUUUUCCAGGUAUUUGGUACAACAGU------GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU ((((.(((((((((.((.....)).))))))))).))))...((------(......(((((.((((((.((((....))))...)))))))))))(((((.....)))))......))) ( -36.60, z-score = -2.44, R) >droYak2.chr3R 5560229 113 - 28832112 UAAACCAAAUAUAUU-AUAUUUUGCAGGUAUUUGGUACAACAGU------GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU ...(((((((((..(-(.....))...))))))))).((((..(------(((....(((((.((((((.((((....))))...))))))))))).....))))....))))....... ( -33.00, z-score = -1.68, R) >droEre2.scaffold_4770 12845979 114 + 17746568 UAUACCAAAUAUAUUAAUAUAUUCCAGGUAUUUGGUACAACAGU------GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU .(((((.((((((....))))))...))))).((((.((((..(------(((....(((((.((((((.((((....))))...))))))))))).....))))....))))..)))). ( -34.00, z-score = -1.89, R) >droAna3.scaffold_13340 8016023 94 - 23697760 --------------------UUUUCAGGCAUUUGGUACAACAGU------GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU --------------------......((((...(((((((..((------(.....)))...(((((((.((((....))))...)))))))))))))).))))....(((....))).. ( -30.90, z-score = -1.75, R) >dp4.chr2 18112915 95 + 30794189 -------------------UUUUGCAGGCAUCUGGUACAACAGU------GACCGUCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU -------------------.......((((.(((......))))------).))((((((((.((((((.((((....))))...)))))))))))(((((.....)))))...)))... ( -33.50, z-score = -1.78, R) >droWil1.scaffold_181108 2611843 104 + 4707319 ----------UGCUUCUUUCUUUGCAGGCAUUUGGUACAACAGU------GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUUAAAGGGUUGAGACCAU ----------..(((..(((((((((((....((((((....))------.))))..(((((.((((((.((((....))))...)))))))))))..)))).)))))))..)))..... ( -33.40, z-score = -1.61, R) >droVir3.scaffold_12822 484860 99 - 4096053 ---------------------UUGCAGGCAUUUGGUACAACAGCGACCGAGACCACCGCGAUUGGGUACGCGUUGCCGGGCGAUAGUACCCAUUGUACCCUGUCAAGGGGUUAAGGCCAU ---------------------.....(((..(((((.(......))))))((((...(((((.((((((..(((((...))))).)))))))))))..(((....)))))))...))).. ( -34.10, z-score = -0.68, R) >droMoj3.scaffold_6540 33143318 100 - 34148556 --------------------UUUGCAGGCAUUUGGUACAACAGUGAGCGAGACCACCGCGAUUGGGUACGCGUUGCCGGGCGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU --------------------......((((...(((((((......(((.......)))...(((((((..(((((...))))).)))))))))))))).))))....(((....))).. ( -32.80, z-score = -1.05, R) >droGri2.scaffold_15074 4440788 102 + 7742996 ------------------AUUUUGCAGGCAUUUGGUACAACAGUGAUCGAGACCACCGCGAUUGGGUACGCGUUGCCGGGCGAUAGUACCCAUUGUACCCUGUCAAAGGGUUAAGACCAU ------------------........((((...(((((((....(((((.(.....).)))))((((((..(((((...))))).)))))).))))))).))))....(((....))).. ( -32.40, z-score = -1.26, R) >consensus _____________UU___AUUUUGCAGGCAUUUGGUACAACAGU______GACCACCGCGAUUGGGUACGCGUUGCCGGACGAUAGUACCCAUUGUACCCUGUCAAAGGGUUGAGACCAU ................................((((.....................(((((.((((((.((((....))))...)))))))))))(((((.....)))))....)))). (-28.09 = -27.73 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:11 2011