| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,748,657 – 16,748,763 |
| Length | 106 |
| Max. P | 0.861928 |
| Location | 16,748,657 – 16,748,763 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 79.33 |
| Shannon entropy | 0.36384 |
| G+C content | 0.42452 |
| Mean single sequence MFE | -29.04 |
| Consensus MFE | -16.84 |
| Energy contribution | -16.76 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16748657 106 + 27905053 AAACAUAUCUUUUGCCGCCUAAAA----UCUUCUAAAAUAUUUUCGUGGUUU----UGAACUCUCUCU-GUUGUUGGCCAGUGCAAUCGACCUCGUUGGCAGCUUGUUGGCGACA .......((....(((((..((((----(.((....)).))))).)))))..----.)).........-(((((..((.(((((...((....))...))).)).))..))))). ( -23.40, z-score = -0.87, R) >droEre2.scaffold_4770 12837941 111 - 17746568 AAACAUGUCUACUGCCGCCCAAAAG----CAUUUGAAAUUUUUUCGUGGCUUGCCUUGAAUUCAUUCUUGCUUUUGGCCAGUGUAAUCGACCUCGUUGGCAGCUUGUCGGCGACC ......((((((((..(((.(((((----((...(((.....((((.((....)).))))....))).))))))))))))))).....))).((((((((.....)))))))).. ( -31.70, z-score = -1.88, R) >droYak2.chr3R 5552261 114 + 28832112 -AAUAUUGAGGUACUCGAUUAGAUUGCAGGCAUUAAAAUAUUUUCGAGGUUUGCCUUAAAUUUUUUCUUGCUGUUGGCCAGUGUAAUCGACCUCGUUGGCAGUUUGUUGGCGACU -......((((...(((((((.(((((.((((..((((.((((..((((....)))))))).))))..))))....).)))).)))))))))))((..((.....))..)).... ( -34.50, z-score = -2.81, R) >droSec1.super_38 22366 109 - 400794 AAACUUAUCUUCUGUCGCCUACAAAA-AUCUUUUGAAAUAUUUUCGUGGUUU----UGAACUCUCUCU-GCUGUUGGCCAGUGUAAUCGACCUCGUUGGCAGCUUGUUGGCGACA .............((((((.((((((-(((...((((.....)))).)))))----)...........-(((((..((.((.((.....)))).))..))))).))).)))))). ( -32.40, z-score = -3.99, R) >droSim1.chr3R 22807010 109 - 27517382 AAACAUAUCUUCUGCCGCCUAAAAAA-AUCUUUUAAAAUAUUUUCGUGGUUU----UGAACUCUCUCU-GCUGUUGGCCAGUGUAAUCGACCUCGUUGGCAGCUUGUUGGCGACA ...............((((.......-....((((((((.........))))----))))........-(((((..((.((.((.....)))).))..))))).....))))... ( -23.20, z-score = -1.00, R) >consensus AAACAUAUCUUCUGCCGCCUAAAAA__AUCUUUUAAAAUAUUUUCGUGGUUU____UGAACUCUCUCU_GCUGUUGGCCAGUGUAAUCGACCUCGUUGGCAGCUUGUUGGCGACA ...............((((............................(((((.....))))).......(((((..((.((.((.....)))).))..))))).....))))... (-16.84 = -16.76 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:10 2011