| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,745,929 – 16,745,996 |
| Length | 67 |
| Max. P | 0.661832 |
| Location | 16,745,929 – 16,745,996 |
|---|---|
| Length | 67 |
| Sequences | 7 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 70.90 |
| Shannon entropy | 0.56973 |
| G+C content | 0.60952 |
| Mean single sequence MFE | -23.74 |
| Consensus MFE | -8.77 |
| Energy contribution | -9.97 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16745929 67 - 27905053 -CCCACCGACAAACGCCCUAAGCACUCUGCGCG------UCCUGCAGGCGGAUCGGCUCAACUGUCAUCCGGCA -.............(((....((...(((((..------...)))))))((((.(((......)))))))))). ( -18.60, z-score = -0.21, R) >droAna3.scaffold_13340 8006490 66 - 23697760 GCCCAGGGC--AGCCCCAAAAGCACUUUGUUCC------UCCUGCAUUUACAUCGGCUCAACUGUCAUCCGGCA (((..((((--((...((((.....))))....------..)))).........(((......)))..))))). ( -12.50, z-score = 0.82, R) >droEre2.scaffold_4770 12835147 72 + 17746568 -CCCGGCGAC-AUCGCCCUCAGCACUCUGGGCGGAGGGCACUUGCAGCCGGAUCGACUCAACUGUCAUCCGGCA -....((((.-...((((((.((.(....))).))))))..)))).(((((((.(((......)))))))))). ( -34.60, z-score = -3.30, R) >droYak2.chr3R_random 2890417 66 - 3277457 -CCCGGCUAC-AUCGCCCUCAGCACUCUGUGGG------UCCUGCAGCUGGAUCGGCUCAACUGUCAUCCGGCA -....((...-...((((.(((....))).)))------)...)).(((((((.(((......)))))))))). ( -24.20, z-score = -1.46, R) >droSec1.super_38 19670 67 + 400794 -CCCACCGACAAACGCCCUAAGCACUCUGGGCG------UCCUGCAGCCGGAUCGGCUCAACUGUCAUCCGGCA -......(.((.((((((..........)))))------)..))).(((((((.(((......)))))))))). ( -27.30, z-score = -3.36, R) >droSim1.chr3R 22804285 67 + 27517382 -CCCACCGACAAACGCCCUAAGCACUCUGGGCG------UCCUGCAGCCGGAUCGGCUCAACUGUCAUCCGGCA -......(.((.((((((..........)))))------)..))).(((((((.(((......)))))))))). ( -27.30, z-score = -3.36, R) >droVir3.scaffold_12822 474092 67 - 4096053 -GCCGAAAAGCAGCUUUUUGUUCGCUUUGUGCUUUUCG-GCUUGUUGCUG-AGCAGCUUAACGGUCAUCA---- -((((.((((((((.....))).)))))..(((.((((-((.....))))-)).)))....)))).....---- ( -21.70, z-score = -1.38, R) >consensus _CCCACCGAC_AACGCCCUAAGCACUCUGGGCG______UCCUGCAGCCGGAUCGGCUCAACUGUCAUCCGGCA ..............................................(((((((.(((......)))))))))). ( -8.77 = -9.97 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:09 2011