| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,741,412 – 16,741,502 |
| Length | 90 |
| Max. P | 0.946351 |
| Location | 16,741,412 – 16,741,502 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 80.81 |
| Shannon entropy | 0.33347 |
| G+C content | 0.56127 |
| Mean single sequence MFE | -30.65 |
| Consensus MFE | -21.40 |
| Energy contribution | -22.28 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.52 |
| SVM RNA-class probability | 0.946351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16741412 90 - 27905053 GUUGUCGUUUUCGCUGAUAUCAGUGGGUUGGGUGGGAAGGUCGAAAGAGUUUCUAGUCCCGCCGCCAUCCGACCGCCCAACCCACCAGCC ............((((......(((((((((((((((((.((....)).)))).........((.....)).))))))))))))))))). ( -37.80, z-score = -3.60, R) >droSim1.chr3R 22799758 89 + 27517382 GUUGUCGUUUUCGCUGAUAUCAGUGGGUUGGGUGGGAAGGUCGAAAGAGUUUCUAGUCCCACCGCCAUCCGACCGCCCCA-CCACCAGGC ...((((....(((((....)))))(((((((..(((((.((....)).)))))...))))..)))...)))).(((...-......))) ( -31.30, z-score = -1.28, R) >droSec1.super_38 15153 85 + 400794 GUUGUCGUUUUCGCUGAUAUCAGUGGGUUGGGUG----GGUCGAAAGAGUUUCUAGUCCCACCGGCAACCGACAGCCCAA-UCACCAGGC ((((((.....(((((....)))))(((((((((----((.(...((.....)).).))))))..)))))))))))....-......... ( -32.60, z-score = -2.67, R) >droYak2.chr3R 5545339 78 - 28832112 GUUGUCGUUUUCACUGAUAUCAGUGGGUUGGGUGGGAAGGUCGAAUGAGUUUCUAGCCCAACU---ACCCUACCACCAA--CC------- ((((.......(((((....)))))((((((((.(((((.((....)).))))).))))))))---..........)))--).------- ( -28.30, z-score = -2.33, R) >droEre2.scaffold_4770 12830674 81 + 17746568 GCUGUCGCUUUCACCGAUAUCAGUGGGUUGCGUGGGAAGGUCGAAUGAGUUUCUAGCCCUACC---ACCCCACCACCCA--CCACC---- (.(((((.......))))).).((((((.(.(((((..(((.(...............).)))---..)))))))))))--)....---- ( -23.26, z-score = -0.85, R) >consensus GUUGUCGUUUUCGCUGAUAUCAGUGGGUUGGGUGGGAAGGUCGAAAGAGUUUCUAGUCCCACCG_CACCCGACCGCCCAA_CCACCAG_C ((.((((....(((((....)))))(((.(((..(((((.((....)).)))))..))).)))......)))).)).............. (-21.40 = -22.28 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:09 2011