| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,723,474 – 16,723,568 |
| Length | 94 |
| Max. P | 0.715804 |
| Location | 16,723,474 – 16,723,568 |
|---|---|
| Length | 94 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.64 |
| Shannon entropy | 0.42608 |
| G+C content | 0.48838 |
| Mean single sequence MFE | -31.60 |
| Consensus MFE | -19.06 |
| Energy contribution | -18.56 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16723474 94 + 27905053 ------------CCUAUUUGGGGCAAAGUUCGCUGCCAUGUCAUAGCAAA--UUAUGGCA--------CAUGGCAUACUUUAAGGCGUCGCACAUAC----UUUGUGCCUCGGCAUGCCA ------------((.....))((((((((....(((((((((((((....--))))))))--------..))))).)))))..(.((..(((((...----..)))))..)).)..))). ( -33.70, z-score = -2.32, R) >droSim1.chr3R 22780090 94 - 27517382 ------------CCCAUUUGGGGCAAAGUUCGCUGCCAUGUCAUAGCAAA--UUAUGGCA--------CAUGGCAUACUUUAAGGCGUCGCACAUAC----UUUGUGCCUCGGCAUGCCA ------------.((....))((((((((....(((((((((((((....--))))))))--------..))))).)))))..(.((..(((((...----..)))))..)).)..))). ( -33.80, z-score = -2.12, R) >droSec1.super_27 788438 94 - 799419 ------------CCCAUUUGGGGCAAAGUUCGCUGCCAUGUCAUAGCAAA--UUAUGGCA--------CAUGGCAUACUUUAAGGCGUCGCACAUAC----UUUGUGCCUCGGCAUGCCA ------------.((....))((((((((....(((((((((((((....--))))))))--------..))))).)))))..(.((..(((((...----..)))))..)).)..))). ( -33.80, z-score = -2.12, R) >droYak2.chr3R 5527156 94 + 28832112 ------------CCUUUUCGGGACAAAGUUCGUCGCCAUGUCAUAGCAAA--UUAUGGCA--------CAUGGCAUACUUCAGGGCGUCGCACAUAC----UUUGUGCCACGGCAUGCCA ------------.......(((((.......))).)).((((((((....--))))))))--------..((((((.(....)(.(((.(((((...----..))))).))).))))))) ( -29.20, z-score = -1.64, R) >droEre2.scaffold_4770 12812740 94 - 17746568 ------------CCUUUUCGGGGCAAAGUUCACCGCCAUGUCAUCGCAAA--UUAUGGCA--------CAUGGCAUACUUUAAGGCGUCGCACAUAC----UUUGUGCCACGGCAUGCCA ------------((.....))((((.........(((((((....((...--.....)))--------)))))).........(.(((.(((((...----..))))).))).).)))). ( -31.00, z-score = -2.11, R) >droAna3.scaffold_13340 7985160 105 + 23697760 -UUUUUUGGAACUUUCACCCGAGCAAAGUUCACAGCGAUGUCACAGCAAA--UUAUGGCA--------CAUGGCAUACUUUAAGGCGUCGCACAUAA----UUUGUGCUUUGGCAUGCCA -.....((((((((((......).))))))).))((.((((((..(((((--(((((((.--------.(((.(.........).))).)).)))))----)))))....)))))))).. ( -27.70, z-score = -1.00, R) >dp4.chr2 18076681 120 - 30794189 UUUUUGAGGGUUUUGCACCCGAGCAAAGUUCACGUCCAUGCCAUAACUAAAUUUGUGGCAACAGCACGCAGUGCAUACUUUAAGGCGCCGCACAUACAUAGUUCAUGCCUCGGCAUGCCA .......(..((((((......))))))..)..((...((((((((......))))))))...))..((.((((..........)))).))............(((((....)))))... ( -32.80, z-score = -0.44, R) >droPer1.super_0 7740773 120 + 11822988 UUUUUGAGGGUUUUGCACCCGAGCAAAGUUCACGUCCAUGCCAUAACUAAAUUUGUGGCAACAGCACGCAUUGCAUACUUUAAGGCGCCGCACAUACAUAGUUCAUGCCUCGGCAUGCCA .......(..((((((......))))))..).((((..((((((((......))))))))...(((.....))).........))))................(((((....)))))... ( -30.80, z-score = -0.11, R) >consensus ____________CCUAUUCGGGGCAAAGUUCACUGCCAUGUCAUAGCAAA__UUAUGGCA________CAUGGCAUACUUUAAGGCGUCGCACAUAC____UUUGUGCCUCGGCAUGCCA ............(((....)))................((((((((......))))))))..........((((((.......(.((..(((((.........)))))..)).))))))) (-19.06 = -18.56 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:08 2011