| Sequence ID | dm3.chr3R |
|---|---|
| Location | 16,720,756 – 16,720,807 |
| Length | 51 |
| Max. P | 0.661123 |
| Location | 16,720,756 – 16,720,807 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 94.31 |
| Shannon entropy | 0.10254 |
| G+C content | 0.38173 |
| Mean single sequence MFE | -11.02 |
| Consensus MFE | -9.96 |
| Energy contribution | -10.24 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.661123 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 16720756 51 - 27905053 CGCAGGCUUGUUGUUGAAUUCGCGUCAUGAAAUUUCACUUGAAAUUUAUGG (((.(((.....)))(....)))).((((((.((((....)))))))))). ( -7.40, z-score = 0.43, R) >droSim1.chr3R 22777335 51 + 27517382 CGCAGGUUCGUUGUUGAACUCGCGUCAUGAAAUUUCACUUGAAAUUUAUGG (((..(((((....)))))..))).((((((.((((....)))))))))). ( -15.40, z-score = -2.99, R) >droSec1.super_27 785683 51 + 799419 CGCAGGUUUGUUGUUGAACUCGCGUCAUGAAAUUUCACUUGAAAUUUAUGG (((..((((......))))..))).((((((.((((....)))))))))). ( -12.70, z-score = -2.00, R) >droYak2.chr3R 5524422 51 - 28832112 CGCAGGUUUAUUGUUGAACUCGCCUCAUGAAAUUUCACUUGAAAUUUAUGG .((..(((((....)))))..))..((((((.((((....)))))))))). ( -12.00, z-score = -2.46, R) >droEre2.scaffold_4770 12810007 50 + 17746568 CGCAGGUUUAUUGUUGAAAUCGCGUCAUGAAAUUU-ACUUGAAAUUUAUGG (((.(((((.......)))))))).((((((.(((-....))).)))))). ( -7.60, z-score = -0.45, R) >consensus CGCAGGUUUGUUGUUGAACUCGCGUCAUGAAAUUUCACUUGAAAUUUAUGG (((.((((((....)))))).))).((((((.((((....)))))))))). ( -9.96 = -10.24 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:31:07 2011